View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17569_low_40 (Length: 276)

Name: NF17569_low_40
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17569_low_40
NF17569_low_40
[»] chr7 (15 HSPs)
chr7 (167-252)||(4997287-4997372)
chr7 (172-252)||(31873338-31873418)
chr7 (172-252)||(35200817-35200897)
chr7 (172-252)||(19804653-19804733)
chr7 (178-252)||(4997883-4997957)
chr7 (178-252)||(35200205-35200279)
chr7 (169-249)||(31873880-31873959)
chr7 (169-259)||(47405473-47405563)
chr7 (169-253)||(21582677-21582762)
chr7 (169-250)||(7953815-7953895)
chr7 (171-215)||(38857040-38857084)
chr7 (173-224)||(15310032-15310082)
chr7 (169-215)||(38858015-38858061)
chr7 (162-247)||(46089706-46089791)
chr7 (211-247)||(17741531-17741567)
[»] chr3 (17 HSPs)
chr3 (172-252)||(3349428-3349508)
chr3 (179-250)||(20393674-20393745)
chr3 (169-252)||(36346304-36346387)
chr3 (178-252)||(3350069-3350143)
chr3 (178-249)||(33304150-33304221)
chr3 (199-249)||(21128178-21128228)
chr3 (172-225)||(36346493-36346546)
chr3 (185-252)||(54203451-54203518)
chr3 (199-259)||(52087625-52087685)
chr3 (172-259)||(55122157-55122244)
chr3 (169-250)||(20374161-20374240)
chr3 (172-252)||(20395479-20395559)
chr3 (199-259)||(50122346-50122406)
chr3 (169-244)||(53272478-53272553)
chr3 (169-226)||(14016786-14016843)
chr3 (169-249)||(34209478-34209558)
chr3 (178-242)||(53273269-53273333)
[»] chr5 (10 HSPs)
chr5 (169-252)||(18848068-18848151)
chr5 (178-259)||(9070442-9070523)
chr5 (178-252)||(35776656-35776731)
chr5 (167-244)||(35926295-35926371)
chr5 (169-249)||(19228705-19228785)
chr5 (199-250)||(16462323-16462373)
chr5 (169-244)||(34944221-34944296)
chr5 (169-207)||(9070283-9070321)
chr5 (187-227)||(9783810-9783850)
chr5 (183-252)||(29413332-29413403)
[»] chr1 (11 HSPs)
chr1 (172-259)||(10974770-10974857)
chr1 (172-252)||(52427549-52427629)
chr1 (178-252)||(33205427-33205501)
chr1 (178-252)||(21263312-21263386)
chr1 (172-249)||(15660285-15660362)
chr1 (178-252)||(26945270-26945343)
chr1 (169-225)||(26354556-26354612)
chr1 (168-249)||(27113975-27114056)
chr1 (178-250)||(24362233-24362304)
chr1 (172-215)||(6562959-6563002)
chr1 (169-242)||(27115889-27115962)
[»] chr2 (15 HSPs)
chr2 (169-259)||(16340593-16340683)
chr2 (178-252)||(43978174-43978248)
chr2 (169-254)||(16118978-16119063)
chr2 (167-252)||(43977525-43977610)
chr2 (169-252)||(7736721-7736803)
chr2 (180-259)||(16119141-16119220)
chr2 (180-258)||(16339868-16339946)
chr2 (168-244)||(36255777-36255853)
chr2 (180-252)||(17913058-17913130)
chr2 (209-252)||(432069-432112)
chr2 (167-244)||(7780398-7780474)
chr2 (169-242)||(36254951-36255024)
chr2 (168-245)||(40055311-40055387)
chr2 (172-252)||(432756-432834)
chr2 (169-248)||(40055574-40055652)
[»] chr4 (8 HSPs)
chr4 (177-258)||(31689070-31689149)
chr4 (171-245)||(30837189-30837263)
chr4 (211-252)||(53777143-53777184)
chr4 (170-226)||(30836626-30836682)
chr4 (169-244)||(17139560-17139634)
chr4 (169-258)||(39666084-39666172)
chr4 (199-252)||(31688921-31688974)
chr4 (169-229)||(12892498-12892558)
[»] scaffold0153 (2 HSPs)
scaffold0153 (178-252)||(16836-16910)
scaffold0153 (211-259)||(17412-17460)
[»] chr6 (4 HSPs)
chr6 (172-252)||(19757919-19757999)
chr6 (168-249)||(8193268-8193349)
chr6 (170-244)||(26855831-26855904)
chr6 (201-245)||(30763287-30763331)
[»] scaffold0206 (1 HSPs)
scaffold0206 (178-252)||(11543-11617)
[»] scaffold0181 (1 HSPs)
scaffold0181 (169-250)||(21025-21105)
[»] chr8 (7 HSPs)
chr8 (183-242)||(203851-203910)
chr8 (183-242)||(318688-318747)
chr8 (199-252)||(3642552-3642605)
chr8 (172-231)||(40039064-40039123)
chr8 (172-249)||(27411609-27411685)
chr8 (167-215)||(32383271-32383319)
chr8 (167-215)||(32437226-32437274)
[»] scaffold0341 (1 HSPs)
scaffold0341 (172-215)||(18149-18192)
[»] scaffold0388 (1 HSPs)
scaffold0388 (169-249)||(13968-14048)


Alignment Details
Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 4997287 - 4997372
Alignment:
Q  167 tggaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    |||| ||||| |||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  4997287 tggagaattgctgtttacacatatgatagggttgaaaaacacatgtaaaagacgaaaatacccctacggcagttaactaccgaagt 4997372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 31873338 - 31873418
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  31873338 aattgttgttgacacatatgataaggctgaaaaacacatgtaaaagatgaaaatgctcctgcggcagttaactaccgaagt 31873418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 35200897 - 35200817
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  35200897 aattgttgtttacacatatgatagggctgaaaaacacatgtaaaagatgaaaatgcccctgcggcagttagctaccgaagt 35200817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 19804733 - 19804653
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |||| || ||||||||||||||    
T  19804733 aattgttgttgacacatgtgataggactgaaaaacacatgtaaaagacgaaaatgctcatgcgacaattaactaccgaagt 19804653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 4997957 - 4997883
Alignment:
Q  178 tgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    |||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  4997957 tgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcccctgcggtagctaactaccgaagt 4997883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 35200205 - 35200279
Alignment:
Q  178 tgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    |||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  35200205 tgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcctctgcggtagttaactaccgaagt 35200279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 31873959 - 31873880
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccga 249  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||||||||||||| || || |||||||||||||||||    
T  31873959 gaaaattgttgttgacacatatgatagggctgaaaa-cacatgtaaaagacgaaaatacctctacggcagttaactaccga 31873880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 47405563 - 47405473
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagtaaagaac 259  Q
    ||||||||||||  || ||| | ||| | ||||||||||||||||||||||||||||| |||  |||||||||||||| ||| ||||||||    
T  47405563 gaaaattgttgtatacgcatgttataaggttgaaaaacacatgtaaaagacgaaaatgtcccctcggcagttaactactgaaataaagaac 47405473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 21582762 - 21582677
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacg-aaaatgcccctgcggcagttaactaccgaagta 253  Q
    |||||||| |||||||||||||| ||||  |||||||||||||||||||||| ||||| | |||||  || |||||||||||||||    
T  21582762 gaaaattgctgttgacacatatgttagggctgaaaaacacatgtaaaagacgaaaaattctcctgcaacaattaactaccgaagta 21582677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 7953895 - 7953815
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaa 250  Q
    ||||||||||||| |||||| || |  |  ||| ||||||||||||||||||||||| ||||| |||||||||||| |||||    
T  7953895 gaaaattgttgttaacacatttggtttggctgataaacacatgtaaaagacgaaaatacccct-cggcagttaactgccgaa 7953815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 38857040 - 38857084
Alignment:
Q  171 aaattgttgttgacacatatgataggattgaaaaacacatgtaaa 215  Q
    |||||||||||||||||| |||||||  |||||||||||||||||    
T  38857040 aaattgttgttgacacatttgatagggctgaaaaacacatgtaaa 38857084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 15310082 - 15310032
Alignment:
Q  173 attgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaa 224  Q
    |||| ||||||||||| |||||||||||||||| |||| |||||||||||||    
T  15310082 attgatgttgacacatttgataggattgaaaaatacat-taaaagacgaaaa 15310032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 38858061 - 38858015
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaa 215  Q
    |||||||| ||||||||||| |||||||  |||||||||||||||||    
T  38858061 gaaaattgatgttgacacatttgatagggctgaaaaacacatgtaaa 38858015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 46089791 - 46089706
Alignment:
Q  162 cttggtggaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactacc 247  Q
    |||| |||| ||||| | ||||||||| | ||| |  ||| ||||||  ||||||||||||||||||||  |||||||||||||||    
T  46089791 cttgctggagaattgcttttgacacatgttataaggctgagaaacaccagtaaaagacgaaaatgccccctcggcagttaactacc 46089706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 17741567 - 17741531
Alignment:
Q  211 gtaaaagacgaaaatgcccctgcggcagttaactacc 247  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  17741567 gtaaaagacggaaatgccccagcggcagttaactacc 17741531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 3349428 - 3349508
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  3349428 aattgttgtttacatatatgatagggttgaaaaacacatgtaaaagacgaaaatgcctctgcggcagctaactaccgaagt 3349508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 20393674 - 20393745
Alignment:
Q  179 gttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaa 250  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  20393674 gttgacacatatgatagggttaaaaaacacatgtaaaagacgaaaatgcctctgcgacagttaactaccgaa 20393745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 36346304 - 36346387
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    |||||||| ||||||||||||| |||||  |||||||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  36346304 gaaaattgctgttgacacatataatagggctgaaaaacacatataaaagacgaaaaagtccctgcggcagttaactaccgaagt 36346387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 3350143 - 3350069
Alignment:
Q  178 tgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    |||| ||||||||||||||  ||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  3350143 tgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcccctgcagtagttaactaccgaagt 3350069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 33304150 - 33304221
Alignment:
Q  178 tgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccga 249  Q
    |||| ||||||||||||||  ||||||||||||||||||||| ||||||| |||||||||||||||| ||||    
T  33304150 tgtttacacatatgatagggctgaaaaacacatgtaaaagacaaaaatgctcctgcggcagttaactgccga 33304221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 21128178 - 21128228
Alignment:
Q  199 tgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccga 249  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  21128178 tgaaaaacacatgtaaaagacgaaaatgtccctgcggcagttaactgccga 21128228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 36346546 - 36346493
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaat 225  Q
    |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  36346546 aattattgttgacacatattatagggttgaaaaacacatgtaaaagacgaaaat 36346493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 54203451 - 54203518
Alignment:
Q  185 acatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    ||||||||||||  ||||||| || ||||||||||||||||| |||||||||| ||||||||| ||||    
T  54203451 acatatgatagggctgaaaaatacgtgtaaaagacgaaaatgtccctgcggcaattaactaccaaagt 54203518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 52087625 - 52087685
Alignment:
Q  199 tgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagtaaagaac 259  Q
    ||||||||| ||||||||||||||||| ||||  || ||||||||||||||||||| ||||    
T  52087625 tgaaaaacatatgtaaaagacgaaaataccccctcgacagttaactaccgaagtaatgaac 52087685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 55122244 - 55122157
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagtaaagaac 259  Q
    ||||||||||| ||||| | ||| || ||| ||||||  ||||||||||||||||||||  || ||||||||||||||| ||| ||||    
T  55122244 aattgttgttggcacatgtcataagactgagaaacactagtaaaagacgaaaatgccccctcgacagttaactaccgaaataatgaac 55122157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 20374161 - 20374240
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaa 250  Q
    |||||||| |||  |||||| ||||| || |||||||||||||||||||||||||| || || ||||||||||||| |||||    
T  20374161 gaaaattgatgtatacacatttgataagactgaaaaacacatgtaaaagacgaaaa-gctcc-gcggcagttaactgccgaa 20374240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 20395559 - 20395479
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    ||||||| |||||| ||||||||||  ||||||| | ||||||||||||||||||| | |||| || |||| || ||||||    
T  20395559 aattgttattgacatatatgatagggctgaaaaagatatgtaaaagacgaaaatgctcatgcgacaattaaatatcgaagt 20395479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 50122346 - 50122406
Alignment:
Q  199 tgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagtaaagaac 259  Q
    ||||||||||| |||||||||||||||||| | | | ||||||||||||||| | ||||||    
T  50122346 tgaaaaacacaagtaaaagacgaaaatgccaccgtgacagttaactaccgaaattaagaac 50122406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 53272478 - 53272553
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaact 244  Q
    |||||||||| ||||||||||||||| |||||| ||||||   ||||| ||| ||||||  ||| |||||||||||    
T  53272478 gaaaattgttattgacacatatgataagattgagaaacaccgataaaaaacgtaaatgcttctgtggcagttaact 53272553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 14016843 - 14016786
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatg 226  Q
    ||||||||||||||| |||| || |  || ||| ||||||||||||||||||||||||    
T  14016843 gaaaattgttgttgatacatttggtttgactgagaaacacatgtaaaagacgaaaatg 14016786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 34209558 - 34209478
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccga 249  Q
    |||||||| ||||||||||||||| | |  | | ||||||  |||||||||| |||||||||||||  |||||||| ||||    
T  34209558 gaaaattgatgttgacacatatgagaaggcttagaaacaccagtaaaagacgtaaatgcccctgcgatagttaactgccga 34209478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 53273333 - 53273269
Alignment:
Q  178 tgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaa 242  Q
    ||||||||||||||| | ||||||||||||   |||||||||| ||||||  || ||||||||||    
T  53273333 tgttgacacatatgagaagattgaaaaacatcagtaaaagacggaaatgcttcttcggcagttaa 53273269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 18848151 - 18848068
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  18848151 gaaaattattgttgacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcccctgcagtaattaactaccgaagt 18848068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 9070523 - 9070442
Alignment:
Q  178 tgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagtaaagaac 259  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||   |||||||||||||||||||||||||| ||||    
T  9070523 tgttgacacatatgataggactgaaaaatacatgtaaaagacgaaaatattcctgcggcagttaactaccgaagtaaggaac 9070442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 35776656 - 35776731
Alignment:
Q  178 tgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatg-cccctgcggcagttaactaccgaagt 252  Q
    |||| ||||||||||||||  ||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  35776656 tgtttacacatatgatagggctgaaaaacatatgtaaaagacgaaaatgccccctgcggcagttaactatcgaagt 35776731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 35926295 - 35926371
Alignment:
Q  167 tggaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaact 244  Q
    ||||||| ||||||| |||||| ||||| |  ||||||||| |||||||||||||||| |||||  ||||||||||||    
T  35926295 tggaaaactgttgttcacacatttgataaggctgaaaaacatatgtaaaagacgaaaa-gccccctcggcagttaact 35926371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 19228785 - 19228705
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccga 249  Q
    |||||||||||||||||||| ||||| |  ||| | ||||| |||||| ||| |||||||||  |||||||||||| ||||    
T  19228785 gaaaattgttgttgacacatttgataaggctgagacacacaagtaaaatacgtaaatgccccctcggcagttaactgccga 19228705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 16462373 - 16462323
Alignment:
Q  199 tgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaa 250  Q
    |||||||||||||||||||||||||| || || ||||||||||||| |||||    
T  16462373 tgaaaaacacatgtaaaagacgaaaa-gctccggcggcagttaactgccgaa 16462323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 34944296 - 34944221
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaact 244  Q
    ||||||||||||| |||||| ||||| |  ||||| |||||| ||||||||||||||  |||| ||| ||||||||    
T  34944296 gaaaattgttgttaacacatttgataaggctgaaacacacatataaaagacgaaaatatcccttcggtagttaact 34944221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 9070283 - 9070321
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaaca 207  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  9070283 gaaaattgttgttgacacttatgatagggttgaaaaaca 9070321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 9783810 - 9783850
Alignment:
Q  187 atatgataggattgaaaaacacatgtaaaagacgaaaatgc 227  Q
    |||||||||| |||||||| |||||||||||| ||||||||    
T  9783810 atatgatagggttgaaaaatacatgtaaaagatgaaaatgc 9783850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 29413403 - 29413332
Alignment:
Q  183 acacatatgataggattgaaaaacacatgtaaaagacg--aaaatgcccctgcggcagttaactaccgaagt 252  Q
    ||||||| ||||||  ||||||||||||||||||| ||  |||||| |  ||||||||||||||| ||||||    
T  29413403 acacatacgatagggctgaaaaacacatgtaaaaggcgaaaaaatgtctttgcggcagttaactatcgaagt 29413332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 10974857 - 10974770
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagtaaagaac 259  Q
    |||||||||||||||||||||||||  |||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||| ||||    
T  10974857 aattgttgttgacacatatgatagggctgaaaaacacatataaaagacgaaaatgcctctgcgacagttaactactgaagtaaggaac 10974770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 52427629 - 52427549
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  52427629 aattgctgttgacatatatgataggactgaaaaacacatgtaaaagacgaaaatgcctctgctacagttaactaccgaagt 52427549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 33205427 - 33205501
Alignment:
Q  178 tgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    |||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  33205427 tgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcctctgcggcagttacctaccgaagt 33205501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 21263312 - 21263386
Alignment:
Q  178 tgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    |||| ||| ||||||||||  |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  21263312 tgtttacatatatgatagggctgaaaaacacatgtaaaagatgaaaatacccctgcggcagttaactaccgaagt 21263386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 15660362 - 15660285
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccga 249  Q
    ||||| |||||||||||||||||||  |||||||||||| |||| ||||||||||| | |||||||||||||||||||    
T  15660362 aattgctgttgacacatatgatagggctgaaaaacacatataaatgacgaaaatgctcatgcggcagttaactaccga 15660285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 26945343 - 26945270
Alignment:
Q  178 tgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    |||| |||||||||||||| |  |||||||||| ||||||||||||||  || ||||||||||||||||||||||    
T  26945343 tgtttacacatatgataggctc-aaaaacacatataaaagacgaaaatatccatgcggcagttaactaccgaagt 26945270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 26354612 - 26354556
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaat 225  Q
    |||||||| ||||||| |||||||||||  ||||||||| |||||||||||||||||    
T  26354612 gaaaattgatgttgactcatatgatagggctgaaaaacatatgtaaaagacgaaaat 26354556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 249
Target Start/End: Original strand, 27113975 - 27114056
Alignment:
Q  168 ggaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccga 249  Q
    ||||||||||||||||||||||||| | |  ||| |||||   |||||||| | ||||||||||| ||||||||||| ||||    
T  27113975 ggaaaattgttgttgacacatatgaaaaggctgagaaacatcagtaaaagatgtaaatgcccctgtggcagttaactgccga 27114056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 24362233 - 24362304
Alignment:
Q  178 tgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaa 250  Q
    |||| |||||| | |||||  |||||||||||||||||||||||||| || || ||||||||||||| |||||    
T  24362233 tgttcacacatttaatagggctgaaaaacacatgtaaaagacgaaaa-gctcccgcggcagttaactgccgaa 24362304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 6563002 - 6562959
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaa 215  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||    
T  6563002 aattgctgttgacacatttgatagggttgaaaaacacatgtaaa 6562959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 27115962 - 27115889
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaa 242  Q
    |||||||||||||||||||||||| | |  ||| ||||||  |||||||||| ||||  || ||||||||||||    
T  27115962 gaaaattgttgttgacacatatgagaaggctgagaaacaccagtaaaagacgtaaatatccatgcggcagttaa 27115889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 16340683 - 16340593
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagtaaagaac 259  Q
    |||||||| ||||||| ||||||||||| |||||||| |||||||||||| |||||||  |||||||||||||||||||||||||| ||||    
T  16340683 gaaaattgctgttgacgcatatgatagggttgaaaaatacatgtaaaagatgaaaatgttcctgcggcagttaactaccgaagtaaggaac 16340593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 43978248 - 43978174
Alignment:
Q  178 tgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    |||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43978248 tgtttacacatatgatagggctgaaaaacacatgtaaaagacgaaaatgcccctgcggtagttaactaccgaagt 43978174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 16118978 - 16119063
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagtaa 254  Q
    |||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||||||||||  | |||||||||||||||||    
T  16118978 gaaaattgctgttgacacatatgatagggctgaaaaacacatgtaaatgacgaaaatgcccctgcaacggttaactaccgaagtaa 16119063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 43977525 - 43977610
Alignment:
Q  167 tggaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    |||| ||||| |||| | |||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43977525 tggagaattgctgtttatacatatgatagagctgaaaaacacatgtaaaagacgaaaatgcccctgcggcagctaactaccgaagt 43977610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 7736721 - 7736803
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||||||| |||||| ||| || ||||||||||| ||||||    
T  7736721 gaaaattgttgtttacacatatgatagggctgaaaaacacatgtaaaagacaaaaatgtccc-gcagcagttaactatcgaagt 7736803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 16119220 - 16119141
Alignment:
Q  180 ttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagtaaagaac 259  Q
    ||||||||||||||||   | ||||||| ||||||||||||||||||||| ||  |||||| ||||||||||||||||||    
T  16119220 ttgacacatatgatagagctaaaaaacatatgtaaaagacgaaaatgcccatgtagcagtttactaccgaagtaaagaac 16119141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 16339868 - 16339946
Alignment:
Q  180 ttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagtaaagaa 258  Q
    ||||||||||||||||   ||||||||| |||||||| |||||||||||| ||| ||| || |||||||||||||||||    
T  16339868 ttgacacatatgatagagctgaaaaacatatgtaaaaaacgaaaatgcccatgcagcaatttactaccgaagtaaagaa 16339946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 36255853 - 36255777
Alignment:
Q  168 ggaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaact 244  Q
    ||||||||||||||||||||||||| | |  ||| ||||||  |||||||||| |||| ||||||||||||||||||    
T  36255853 ggaaaattgttgttgacacatatgagaaggctgagaaacaccagtaaaagacgtaaattcccctgcggcagttaact 36255777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 17913130 - 17913058
Alignment:
Q  180 ttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    ||||||||| |||||||  |||||||||||| ||||| |||||||| | | ||| ||||||||||||||||||    
T  17913130 ttgacacatttgatagggctgaaaaacacatataaaaaacgaaaatactcttgcagcagttaactaccgaagt 17913058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 432069 - 432112
Alignment:
Q  209 atgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  432069 atgtaaaagacaaaaatgcccctgcgacagttaactaccgaagt 432112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 7780474 - 7780398
Alignment:
Q  167 tggaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaact 244  Q
    |||||||||||||||| ||||| || |  |  ||| ||||||||||||||||||||||||||||| ||| ||||||||    
T  7780474 tggaaaattgttgttggcacatttggtttggctgagaaacacatgtaaaagacgaaaatgcccct-cggtagttaact 7780398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 36254951 - 36255024
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaa 242  Q
    |||||||| ||||||||||||||| | |  ||| ||||||  |||||||||| |||||||||||||| ||||||    
T  36254951 gaaaattgatgttgacacatatgagaaggctgagaaacaccagtaaaagacgtaaatgcccctgcggaagttaa 36255024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 40055311 - 40055387
Alignment:
Q  168 ggaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaacta 245  Q
    ||||||||||||||||||||||||  | |  ||| ||||||||||||||||||||| | ||||| || ||||||||||    
T  40055311 ggaaaattgttgttgacacatatgcaaaggctgataaacacatgtaaaagacgaaattacccct-cgacagttaacta 40055387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 432834 - 432756
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    ||||||||||||||  ||||||||| || ||||| | ||||||||| |||||||||| | || | |||||||||| |||||    
T  432834 aattgttgttgaca--tatgatagggttaaaaaatatatgtaaaaggcgaaaatgccacagcagtagttaactactgaagt 432756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 40055652 - 40055574
Alignment:
Q  169 gaaaattgttgttgacacatatg-ataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccg 248  Q
    ||||||||||||||||||||||| | |||| ||| ||||||||||||||||  ||||| ||||  ||| ||||||||||||    
T  40055652 gaaaattgttgttgacacatatgtaaagga-tgagaaacacatgtaaaagaaaaaaatacccc-acggtagttaactaccg 40055574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 31689149 - 31689070
Alignment:
Q  177 ttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagtaaagaa 258  Q
    ||||||||||||  ||||||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  31689149 ttgttgacacat--gataggactggaaaacacatgtaaaagacgaaaatgcacatgcggcagttaactaccgaagtaaagaa 31689070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 30837263 - 30837189
Alignment:
Q  171 aaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaacta 245  Q
    ||||||||||| |||||||||||||   |||||||||||||||||||||||||||  |||||  |||||||||||    
T  30837263 aaattgttgttaacacatatgatagagctgaaaaacacatgtaaaagacgaaaatatccctgtagcagttaacta 30837189  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 53777143 - 53777184
Alignment:
Q  211 gtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  53777143 gtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 53777184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 30836626 - 30836682
Alignment:
Q  170 aaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatg 226  Q
    ||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  30836626 aaaattgctgttgacacgtatgatagggctgaaaaacacatgtaaaagacgaaaatg 30836682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 17139560 - 17139634
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaact 244  Q
    ||||||||||||| |||||||| ||| | |||| |||||||||||||| |||||| || |||| ||||||||||||    
T  17139560 gaaaattgttgttcacacatatcataaggttgagaaacacatgtaaaatacgaaattgtccct-cggcagttaact 17139634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 39666084 - 39666172
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagtaaagaa 258  Q
    ||||| ||||||  |||||| | ||| | ||||||||||||||||||| |||||||||  | ||||||||||||||||| || |||||||    
T  39666084 gaaaagtgttgtatacacatgttataaggttgaaaaacacatgtaaaaaacgaaaatg-tcatgcggcagttaactaccaaaataaagaa 39666172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 31688921 - 31688974
Alignment:
Q  199 tgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    ||||||||||||||||||||| ||||| ||  | ||| ||||||||||||||||    
T  31688921 tgaaaaacacatgtaaaagacaaaaatacctatccggtagttaactaccgaagt 31688974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 12892558 - 12892498
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgccc 229  Q
    ||||||||||||  |||||| | ||||| || |||||||||||||||| || |||||||||    
T  12892558 gaaaattgttgtatacacatctaatagggttaaaaaacacatgtaaaataccaaaatgccc 12892498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 16836 - 16910
Alignment:
Q  178 tgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    |||| ||||||||| | ||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16836 tgtttacacatatgcttgggctgaaaaacacatgtaaaagacgaaaatgcccctgcggtagttaactaccgaagt 16910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 17460 - 17412
Alignment:
Q  211 gtaaaagacgaaaatgcccctgcggcagttaactaccgaagtaaagaac 259  Q
    |||||||||||||||| |||  |||||||||||||||||| ||| ||||    
T  17460 gtaaaagacgaaaatgacccctcggcagttaactaccgaaataatgaac 17412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 19757999 - 19757919
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    ||||| |||||||||||||||||||  ||||||| |||| |||||||||||||| | ||||| ||||||||||||||||||    
T  19757999 aattgctgttgacacatatgatagggctgaaaaatacatataaaagacgaaaatactcctgcagcagttaactaccgaagt 19757919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 8193349 - 8193268
Alignment:
Q  168 ggaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccga 249  Q
    ||||||||||||||||||||||||| | | |||| ||||||  |||||||||| |||||||||||| |||||||||| ||||    
T  8193349 ggaaaattgttgttgacacatatgagaaggttgagaaacaccagtaaaagacgtaaatgcccctgcagcagttaactgccga 8193268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 26855831 - 26855904
Alignment:
Q  170 aaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaact 244  Q
    ||||||||||||| ||||| ||| | | ||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  26855831 aaaattgttgttggcacatttgagaaggttgaaaaacacatgtaaaagatgaaaa-gccccggcggcagttaact 26855904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 30763287 - 30763331
Alignment:
Q  201 aaaaacacatgtaaaagacgaaaatgcccctgcggcagttaacta 245  Q
    ||||||||  |||||||||| |||||| |||||||||||||||||    
T  30763287 aaaaacaccagtaaaagacgtaaatgctcctgcggcagttaacta 30763331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 11543 - 11617
Alignment:
Q  178 tgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    |||| ||| ||||||||||  ||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||    
T  11543 tgtttacatatatgatagggctgaaaaacatatgtaaaagacgaaaatgctcctgcggcagttaactatcgaagt 11617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 21025 - 21105
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaa 250  Q
    |||||||||||||||||||| ||| | |  ||||||||||||||||| |||| ||||||||| ||||||||||||| |||||    
T  21025 gaaaattgttgttgacacatttgagaaggctgaaaaacacatgtaaatgacg-aaatgccccggcggcagttaactgccgaa 21105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 203851 - 203910
Alignment:
Q  183 acacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaa 242  Q
    ||||||||||||||  |||||||||||| ||||||||||||||| |||||| ||||||||    
T  203851 acacatatgatagggctgaaaaacacatataaaagacgaaaatgtccctgcagcagttaa 203910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 318688 - 318747
Alignment:
Q  183 acacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaa 242  Q
    ||||||||||||||  |||||||||||| ||||||||||||||| |||||| ||||||||    
T  318688 acacatatgatagggctgaaaaacacatataaaagacgaaaatgtccctgcagcagttaa 318747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 3642605 - 3642552
Alignment:
Q  199 tgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccgaagt 252  Q
    |||||||||||| |||||||||||||| ||| ||||||||||||||| ||||||    
T  3642605 tgaaaaacacatataaaagacgaaaatacccatgcggcagttaactatcgaagt 3642552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 40039064 - 40039123
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccct 231  Q
    ||||||||||||||||||||  | |  ||||||||||||||||||||||||||| |||||    
T  40039064 aattgttgttgacacatatgcaaaggctgaaaaacacatgtaaaagacgaaaatacccct 40039123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 27411609 - 27411685
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccga 249  Q
    ||||||||||||||||| || |  |  ||| ||||||||||||||||||||||| ||||| || ||||||||||||||    
T  27411609 aattgttgttgacacatttggtttggctgagaaacacatgtaaaagacgaaaatacccct-cgacagttaactaccga 27411685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 32383319 - 32383271
Alignment:
Q  167 tggaaaattgttgttgacacatatgataggattgaaaaacacatgtaaa 215  Q
    |||| ||||||||||||||| | |||||||  |||||||||||||||||    
T  32383319 tggagaattgttgttgacacttttgatagggctgaaaaacacatgtaaa 32383271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 32437274 - 32437226
Alignment:
Q  167 tggaaaattgttgttgacacatatgataggattgaaaaacacatgtaaa 215  Q
    |||| ||||||||||||||| | |||||||  |||||||||||||||||    
T  32437274 tggagaattgttgttgacacttttgatagggctgaaaaacacatgtaaa 32437226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 18192 - 18149
Alignment:
Q  172 aattgttgttgacacatatgataggattgaaaaacacatgtaaa 215  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||    
T  18192 aattgctgttgacacatttgatagggttgaaaaacacatgtaaa 18149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 14048 - 13968
Alignment:
Q  169 gaaaattgttgttgacacatatgataggattgaaaaacacatgtaaaagacgaaaatgcccctgcggcagttaactaccga 249  Q
    ||||||||||||||||| |||||| | || ||| ||||||  |||||||| | |||||  ||||||||||| |||| ||||    
T  14048 gaaaattgttgttgacatatatgagaagactgagaaacaccagtaaaagatgtaaatgttcctgcggcagtgaactgccga 13968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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