View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17569_low_42 (Length: 269)
Name: NF17569_low_42
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_42 |
 | |
|
| [»] scaffold1084 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 32860747 - 32860994
Alignment:
| Q |
9 |
aattattcttcataaaatcaatttcagtaaccaaaacctaaaagctaaaatcaatttcagtactgctatcactaatactctcaatctcttgattca---- |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32860747 |
aattattcttcataaaatcaatttcagtaaccaaaacctaaaagctaaaatcaatttcagtactgctatcactaatactctcaatctcttgattcaattt |
32860846 |
T |
|
| Q |
105 |
--atttcaatttcactatcctgattcaattactctcactactactatcaatgtcagcatagtaatttcaaaactgacctgaaaactgatgggttgcgtgc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32860847 |
caatttcaatttcactatcctgattcaattactctcactactactatcaatgtcagcatagtaatttcaaaactgacctgaaaactgatgggttgcgtgc |
32860946 |
T |
|
| Q |
203 |
tttcgtgttggtactgcgttcgtgttgatgggctgagcgagtagagga |
250 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32860947 |
tttcgtgttggtactgcgtttgtgttgatgggctgagcgagtagagga |
32860994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 45298753 - 45298923
Alignment:
| Q |
20 |
ataaaatcaatttcagtaaccaaaacctaaaagctaaaatcaatttca------gtactgctatcactaatact---ctcaatctcttgattcaatttca |
110 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||| |||||||||||||| ||||| ||||||||| |||| |||| | |||| ||||||||||| |
|
|
| T |
45298753 |
ataaaaccaattttagtaaccaaactctaaaagttaaaatcaatttcaatttatgtactactatcactactactactctcactatcttaattcaatttca |
45298852 |
T |
|
| Q |
111 |
atttcactatcctgattcaattactctcactactactatcaatgtcagcatagtaatttcaaaactgacct |
181 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
45298853 |
atttcaatatcatgattcaattactctcactactactatcaatttcagtatagtaatttcaaaactgacct |
45298923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 7871178 - 7871334
Alignment:
| Q |
29 |
atttcagtaaccaaaacctaaaagctaaaatcaatttca------gtactgctatcactaatactctcaatctcttgattcaatttcaatttcactatcc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| | |||||||| |||||||||||| | |
|
|
| T |
7871178 |
atttcagtaaccaaaacctaaaagctaaaatcaatttcaatttcagtaca-ctatcactactactctcgctatcttgatttaatttcaatttc------c |
7871270 |
T |
|
| Q |
123 |
tgattcaattactctcactactactatcaatgtcagcatagtaatttcaaaactgacctgaaaa |
186 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
7871271 |
gggctcaattactctcactactactatcaatttcagtatagtaatttcaaaactgacctgaaaa |
7871334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 21214456 - 21214289
Alignment:
| Q |
21 |
taaaatcaatttcagtaaccaaaacctaaaagctaaaat--caatttcagtactgctatcactaatactctcaatctcttgattcaatttcaatttcact |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| |||||||| ||||||||||||| |||||||| | ||| |||||||||||||||||| | |
|
|
| T |
21214456 |
taaaatcaatttcagtaaccaaaatctaaaaaaatcaatttcaatttcaagactgctatcactactactctcactatctcgattcaatttcaatttcaat |
21214357 |
T |
|
| Q |
119 |
atcctgattcaattactctcactactactatcaatgtcagcatagtaatttcaaaactgacctgaaaa |
186 |
Q |
| |
|
||||| |||||||||||| |||| ||||||||| |||| |||| |||||||||||| || |||||| |
|
|
| T |
21214356 |
atcctaattcaattactccgactagtactatcaacttcagtatagaaatttcaaaactaacttgaaaa |
21214289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1084 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1084
Description:
Target: scaffold1084; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 288 - 360
Alignment:
| Q |
60 |
caatttcagtactgctatcactaatactctcaatctcttgattcaatttcaatttcactatcctgattcaatt |
132 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||| | |||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
288 |
caatttaagtactgcaatcactactactctcactatcttaattcggtttcaatttcaatatcctgattcaatt |
360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 3427481 - 3427509
Alignment:
| Q |
39 |
ccaaaacctaaaagctaaaatcaatttca |
67 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3427481 |
ccaaaacctaaaagctaaaatcaatttca |
3427509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University