View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_low_44 (Length: 268)
Name: NF17569_low_44
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 8403272 - 8403091
Alignment:
| Q |
1 |
gatgtatcctctaattaacaaaaaa--tgtcatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacat |
98 |
Q |
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| T |
8403272 |
gatgtatcccctaattaacaaaaaaaatgccatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacat |
8403173 |
T |
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| Q |
99 |
agttctaaaatgataatgttgacgataaacattatattttgcctgcattgcaatttgagaattttaattcattattgagcaa |
180 |
Q |
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| T |
8403172 |
agttctaaaatgataatgttgacgataaccattatcttttgcctccattgcaatttgagaattttaattcattattgagcaa |
8403091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 160
Target Start/End: Complemental strand, 8429150 - 8428991
Alignment:
| Q |
5 |
tatcctctaattaacaaaaaatgtcatattca----catgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatag |
100 |
Q |
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| T |
8429150 |
tatcccctaattgacgaaaaatgccatattcatatgcatgaatcttgggaatgttaatgagcataggagacaaatgaatagcgacatggttcaaacatag |
8429051 |
T |
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| Q |
101 |
ttctaaaatgataatgttgacgataaacattatattttgcctgcattgcaatttgagaat |
160 |
Q |
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| T |
8429050 |
ttctaaaatgccaatctcgacattaaccattatcgtttgccaccattgcaatatgagaat |
8428991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 8428796 - 8428758
Alignment:
| Q |
211 |
acatattgaagtcccaagaggcgctaaatatcccaaatt |
249 |
Q |
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| T |
8428796 |
acatgttgaagtcccaagaggcgctaaatatcccaaatt |
8428758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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