View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_low_49 (Length: 251)
Name: NF17569_low_49
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 8712020 - 8711806
Alignment:
| Q |
18 |
tgaaggacatcctttcacttggacaattaagagggaacttgaagaaaatattcaatgcagactggatagagcggttgctacagagaagttcatcaatagg |
117 |
Q |
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| T |
8712020 |
tgaaggacatcctttcacttggacaaataagagggaacttgaagaaaatattcaatgcagactggacagagcggttgctacagaggagttcatcaatagg |
8711921 |
T |
|
| Q |
118 |
ttctctcccatcagagtcctccatcttccaaggtatggttctgatcatgctcctattttgattgaattacaagctgtttctttgcggagtcgaaagaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8711920 |
ttctctcccatcagagtcctccatcttccaaggtatggttatgatcatgttcctattttgattgaattacaagctgtttctttgcggagtcgaaagaaaa |
8711821 |
T |
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| Q |
218 |
ggacccgtatttttc |
232 |
Q |
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||||||||||||||| |
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| T |
8711820 |
ggacccgtatttttc |
8711806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 20926980 - 20926767
Alignment:
| Q |
18 |
tgaaggacatcctttcacttggacaattaagagggaacttgaagaaaatattcaatgcagactggatagagcggttgctacagagaagttcatcaatagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
20926980 |
tgaaggacatcctttcacttggacaaataagagggaatttgaagaaaatattcaatacagactggacagagcggttgctacagaagagttcatcaatagg |
20926881 |
T |
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| Q |
118 |
ttctctcccatcagagtcctccatcttccaaggtatggttctgatcatgctcctattttgattgaattacaagctgtttctttgcggagtcgaaagaaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
20926880 |
ttctctcccatcagagtcctccatcttccaaggtatggttctgatcatgctcctattttgattgaattagaagttgtttctttgcggagtcgaaagaaaa |
20926781 |
T |
|
| Q |
218 |
ggacccgtattttt |
231 |
Q |
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|||||||||||||| |
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| T |
20926780 |
ggacccgtattttt |
20926767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 40047459 - 40047615
Alignment:
| Q |
18 |
tgaaggacatcctttcacttggacaattaagagggaacttgaagaaaatattcaatgcagactggatagagcggttgctacagagaagttcatcaatagg |
117 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||| |||| |||||||| || || |||| ||||||||| ||| |
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| T |
40047459 |
tgaaggacatccgttcacttggacaaataagagggagcttgaggaaaatattcaatgttgactagatagagctgtggcatcagaagagttcatcagtaga |
40047558 |
T |
|
| Q |
118 |
ttctctcccatcagagtcctccatcttccaaggtatggttctgatcatgctcctatt |
174 |
Q |
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||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| |
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| T |
40047559 |
ttcgctcccatcagagttctccaccttcccaggtatggttctgatcatgctcctatt |
40047615 |
T |
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