View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_low_50 (Length: 249)
Name: NF17569_low_50
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_50 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 6629741 - 6629976
Alignment:
| Q |
11 |
caaagggaagtaggaaagtcaaaaaaccgctagacaacctaaaagaccacaaaagatgacatggnnnnnnnntaccattcctaaaggaatccctaaaacc |
110 |
Q |
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| T |
6629741 |
caaagggaagtaggaaagtcacaaaaccgctagacaacctaaaagaccacaaaagatgacatggaaaaaa--taccattcctaaaggaatccctaaaacc |
6629838 |
T |
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| Q |
111 |
tcgaactaacgaacaaatcactcgtgataaaggcataacctcaacccaaacccacctcacacacacctatccaacgaaaaactacgtattgagaccccaa |
210 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
6629839 |
tcgaactaacgaacaaaccactcgtgataaaggcataacctcaacccaaacccacctcacacacacctatccaacg-aaaactacgcattgagaccccaa |
6629937 |
T |
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| Q |
211 |
aaccccaagccaagcaagtgtatacaatcaacaaccacc |
249 |
Q |
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| T |
6629938 |
aaccccaagccaagcaagtgtatacaatcaacaaccacc |
6629976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 6803297 - 6803536
Alignment:
| Q |
12 |
aaagggaagtaggaaagtcaaaaaaccgctagacaacctaaaagaccacaaaagatgacatggnnnnnnnntaccattcctaaaggaatccctaaaacct |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| |
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| T |
6803297 |
aaagggaagtaggaaagtcaaaaaaccgctagacaacctaaaagaccacaaaagatgacatggaaaaaaaataccattcctaaaagaatcgctaaaacct |
6803396 |
T |
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| Q |
112 |
cgaactaacgaacaaatcactcgtgataaaggcataacctcaacccaaacccacctcacacacacctatccaacgaaaaactacgtattgagaccccaaa |
211 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||| |
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| T |
6803397 |
cgaactaacgaacaaatcactcgtgataaagccataacctcaacccaaacccacctcacacactcctatcc-actgaaaactacgcattgagaccccaaa |
6803495 |
T |
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| Q |
212 |
---accccaagccaagcaagtgtatacaatcaacaaccacc |
249 |
Q |
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| T |
6803496 |
agtaccccaagccaagcaagtgtatacaatcaacaaccacc |
6803536 |
T |
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