View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_low_54 (Length: 242)
Name: NF17569_low_54
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_54 |
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| [»] scaffold0038 (2 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 28328262 - 28328452
Alignment:
| Q |
1 |
ctgaaaaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgccaatgtggaaagtttagacctatcaggaaataattttacaattc |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||| |
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| T |
28328262 |
ctgaagaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagtttcacaattc |
28328361 |
T |
|
| Q |
101 |
ttccagaatgcatcaaagattgtcactttttatcggatcttaaattggatgattgcaagtgccttagagaaattagagggattccaccaaa |
191 |
Q |
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|||||||||||||||||||||||| |||||| ||| | |||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28328362 |
ttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaa |
28328452 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 28505898 - 28506088
Alignment:
| Q |
1 |
ctgaaaaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgccaatgtggaaagtttagacctatcaggaaataattttacaattc |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||| |
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| T |
28505898 |
ctgaagaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgctaatgtggaaatattagacctatcaggaaatagtttcacaattc |
28505997 |
T |
|
| Q |
101 |
ttccagaatgcatcaaagattgtcactttttatcggatcttaaattggatgattgcaagtgccttagagaaattagagggattccaccaaa |
191 |
Q |
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|||||||||||||||||||||||| |||||| ||| | |||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28505998 |
ttccagaatgcatcaaagattgtcgctttttgtcgaagcttacattggatgattgcaagtgccttcgagaaattagagggattccaccaaa |
28506088 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 28191065 - 28191251
Alignment:
| Q |
1 |
ctgaaaaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgccaatgtggaaagtttagacctatcaggaaataattttacaattc |
100 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | ||| || ||||||||||||||||||||||| ||||||| |
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| T |
28191065 |
ctgaaaagttgcaacttgtcagatgaatttcttccaatatttgtcatgtggtctgcttacgtgagaatcttagacctatcaggaaataatttcacaattc |
28191164 |
T |
|
| Q |
101 |
ttccagaatgcatcaaagattgtcactttttatcggatcttaaattggatgattgcaagtgccttagagaaattagagggattccac |
187 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28191165 |
ttccagaatgcatcaaagattgtcaccttttatcggatcttatattggatgattgcaagtgccttagagaaattagagggattccac |
28191251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 28239039 - 28239229
Alignment:
| Q |
1 |
ctgaaaaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgccaatgtggaaagtttagacctatcaggaaataattttacaattc |
100 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||| |
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| T |
28239039 |
ctgagaaattgcatcttgtcagatgaatttcttccaataattgtcatgtggtctgctaatgtgtcaaagttagacctatcaggaaataatttcacaattc |
28239138 |
T |
|
| Q |
101 |
ttccagaatgcatcaaagattgtcactttttatcggatcttaaattggatgattgcaagtgccttagagaaattagagggattccaccaaa |
191 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28239139 |
ttccagaatgcatcaaagattgtcgctttttaacggatcttatattggatgattgcaaatgccttagagaaattagagggattccaccaaa |
28239229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 28524898 - 28525088
Alignment:
| Q |
1 |
ctgaaaaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgccaatgtggaaagtttagacctatcaggaaataattttacaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| ||||||| |
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| T |
28524898 |
ctgaaaaaatgcaacttgtcagatgattttcttccaatacttgtcatgtggtctgctaatgtgaaaatattagacctatcaggaaataatttcacaattc |
28524997 |
T |
|
| Q |
101 |
ttccagaatgcatcaaagattgtcactttttatcggatcttaaattggatgattgcaagtgccttagagaaattagagggattccaccaaa |
191 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
28524998 |
ttccagaatgcatcaaagattttcagtttttatatgctcttatattggatgattgcaagtgccttagagaaattagagggatgccgccaaa |
28525088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 28246025 - 28246210
Alignment:
| Q |
6 |
aaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgccaatgtggaaagtttagacctatcaggaaataattttacaattcttcca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||| |||||||||||| |
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| T |
28246025 |
aaaatgcaacttgtcagatgaatttcttccaatagttgtcatgtggtctgcgaatgtagaatttttaaacctatcagaaaacaatttcacaattcttcca |
28246124 |
T |
|
| Q |
106 |
gaatgcatcaaagattgtcactttttatcggatcttaaattggatgattgcaagtgccttagagaaattagagggattccaccaaa |
191 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28246125 |
gaatgcatcaaagattgtcgctttttatggtctcttaggttggatgattgcaagtgccttagagaaattagagggattccaccaaa |
28246210 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 191
Target Start/End: Original strand, 28142368 - 28142490
Alignment:
| Q |
69 |
tttagacctatcaggaaataattttacaattcttccagaatgcatcaaagattgtcactttttatcggatcttaaattggatgattgcaagtgccttaga |
168 |
Q |
| |
|
||||| ||||||||| | |||||||||||| ||||| |||||| ||||||| || |||||||| | ||| |||||||| |||| |||| ||| | |
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|
| T |
28142368 |
tttagtcctatcagggagtaattttacaatccttccggaatgcctcaaagaatgcaactttttacagagccttgaattggataattgtaagtctcttcaa |
28142467 |
T |
|
| Q |
169 |
gaaattagagggattccaccaaa |
191 |
Q |
| |
|
|||||||| |||||||| ||||| |
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| T |
28142468 |
gaaattagggggattccgccaaa |
28142490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 26805297 - 26805346
Alignment:
| Q |
169 |
gaaattagagggattccaccaaaattgaaagagctttctgcagcaggatg |
218 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||||||| |||||| |
|
|
| T |
26805297 |
gaaattagagggattccaccgaatctaaaagagctttctgcagaaggatg |
26805346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 39201 - 39391
Alignment:
| Q |
1 |
ctgaaaaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgccaatgtggaaagtttagacctatcaggaaataattttacaattc |
100 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||| |
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|
| T |
39201 |
ctgagaaattgcatcttgtcagatgaatttcttccaataattgtcatgtggtctgctaatgtgtcaaagttagacctatcaggaaataatttcacaattc |
39300 |
T |
|
| Q |
101 |
ttccagaatgcatcaaagattgtcactttttatcggatcttaaattggatgattgcaagtgccttagagaaattagagggattccaccaaa |
191 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39301 |
ttccagaatgcatcaaagattgtcgctttttaacggatcttatattggatgattgcaaatgccttagagaaattagagggattccaccaaa |
39391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 46187 - 46372
Alignment:
| Q |
6 |
aaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgccaatgtggaaagtttagacctatcaggaaataattttacaattcttcca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |||| ||||||||| ||| ||||| |||||||||||| |
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|
| T |
46187 |
aaaatgcaacttgtcagatgaatttcttccaatagttgtcatgtggtctgcgaatgtagaatttttaaacctatcagaaaacaatttcacaattcttcca |
46286 |
T |
|
| Q |
106 |
gaatgcatcaaagattgtcactttttatcggatcttaaattggatgattgcaagtgccttagagaaattagagggattccaccaaa |
191 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46287 |
gaatgcatcaaagattgtcgctttttatggtctcttaggttggatgattgcaagtgccttagagaaattagagggattccaccaaa |
46372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 6 - 191
Target Start/End: Complemental strand, 55743 - 55558
Alignment:
| Q |
6 |
aaaatgcaacttgtcagatgaatttcttccaatacttgtcatgtggtctgccaatgtggaaagtttagacctatcaggaaataattttacaattcttcca |
105 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
55743 |
aaaatgcaacttatcagataaatttcttccaatacttgtcatgtggtctgctaatgtgaaaactttagacctatcaggaaataatttcacaattcttccg |
55644 |
T |
|
| Q |
106 |
gaatgcatcaaagattgtcactttttatcggatcttaaattggatgattgcaagtgccttagagaaattagagggattccaccaaa |
191 |
Q |
| |
|
|||||||| |||||||||| |||||| | | |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
55643 |
gaatgcatgaaagattgtcgctttttgtggtttcttaaattggatgattgcaagtgccttcgagaaattagagggattccaccaaa |
55558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 5088448 - 5088354
Alignment:
| Q |
96 |
aattcttccagaatgcatcaaagattgtcactttttatcggatcttaaattggatgattgcaagtgccttagagaaattagagggattccaccaa |
190 |
Q |
| |
|
|||||||||||||||| ||||||| |||| |||| ||| | ||| ||||| |||| ||||||| ||| |||||||||||||||||| |||| |
|
|
| T |
5088448 |
aattcttccagaatgcctcaaagaatgtcgctttctatggagccttcaattgaatgaatgcaagtctcttcaagaaattagagggattcctccaa |
5088354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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