View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_low_7 (Length: 518)
Name: NF17569_low_7
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 13 - 501
Target Start/End: Original strand, 2924114 - 2924603
Alignment:
| Q |
13 |
aatatcaaaatgaagaattctcttcttttcttcctcacttacagcaggcaaattcgctctctcgaagcagtcaataaccgttcttctaatcttctgtgca |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2924114 |
aatagcaaaatgaagaattctcttcttttcttcctcgcttacatcaggcaaattcgctctctcgaagcagtcaataaccgttcttctaatcttctgtgca |
2924213 |
T |
|
| Q |
113 |
tcttcaacttcctacagattacaggaataaacagaatccagttacacatctttagccacaataatagctatggtttattgacaattctaaatatnnnnnn |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2924214 |
tcttcaacttcctacagattacaggaataaacagaatccagttacacatctttagccacaataatagctatggtttattgacaattctaaataaataaaa |
2924313 |
T |
|
| Q |
213 |
nn-ctatggtttatggacatgatgaaagctatataccttcaaaaaatggcaattctccaccactcctggcgtgttaaatgtgttaactttagcgcccaca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2924314 |
aaactatggtttatggacatgatgaaagctatataccttcaaaaaatggcaattctccaccactcctggcgtgttaaatgtgttaactttagcgcccaca |
2924413 |
T |
|
| Q |
312 |
ccaatgattaggtaatcatagtccacgacaaattcttcttgcccattaagattgttgtttgcattagatttacagtaaactttcttattttcagcatcaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2924414 |
ccaatgattaggtaatcatagtccacgacaaattcttcttgcccattaagattgttgtttgcattagatttacagtaaactttcttattttcagcatcaa |
2924513 |
T |
|
| Q |
412 |
tcttgaagcattctgcttcactgaattgcacgtccacccttttctgctcagacaaaacaggaaaaaggaattaattagccatgatctgca |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2924514 |
tcttgaagcattctgcttcactgaattgcacgtccacccttttctgctcagacaaaacaggaaaaaggaattaattagccatgatctgca |
2924603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 36126770 - 36126658
Alignment:
| Q |
13 |
aatatcaaaatgaagaattctcttcttttcttcctcacttacagcaggcaaattcgctctctcgaagcagtcaataaccgttcttctaatcttctgtgca |
112 |
Q |
| |
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|||| ||||||||||||||||||| | ||||| ||||| ||| ||||||| | |||||||| |||| |||||| || |||||||||||||| |||||| |
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| T |
36126770 |
aatagcaaaatgaagaattctctttctctcttcatcactcacactaggcaaacttgctctctcaaagctgtcaattacagttcttctaatcttttgtgca |
36126671 |
T |
|
| Q |
113 |
tcttcaacttcct |
125 |
Q |
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||||||||||||| |
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| T |
36126670 |
tcttcaacttcct |
36126658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 245 - 437
Target Start/End: Complemental strand, 36126471 - 36126279
Alignment:
| Q |
245 |
taccttcaaaaaatggcaattctccaccactcctggcgtgttaaatgtgttaactttagcgcccacaccaatgattaggtaatcatagtccacgacaaat |
344 |
Q |
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||||||||| ||||||||||||||| || || || || ||||||||||| || || || || ||| | ||||||| ||| || ||||||||||| ||| |
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| T |
36126471 |
taccttcaagaaatggcaattctccgtgacaccaggagtattaaatgtgttgacatttgctccaacagctatgattaagtagtcgtagtccacgacgaat |
36126372 |
T |
|
| Q |
345 |
tcttcttgcccattaagattgttgtttgcattagatttacagtaaactttcttattttcagcatcaatcttgaagcattctgcttcactgaat |
437 |
Q |
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||||||| |||| | ||| |||||| ||||||| |||||||||||| | ||| | ||||||||||||| |||||||||||||||||| |
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| T |
36126371 |
tcttctttttcattcaaattattgtttatattagatcgacagtaaacttttctgtttactgcatcaatcttgagacattctgcttcactgaat |
36126279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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