View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1756_high_2 (Length: 551)
Name: NF1756_high_2
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1756_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 23 - 541
Target Start/End: Complemental strand, 7844801 - 7844285
Alignment:
| Q |
23 |
aaaacacataaactttcttaatgtgtgcaatgatttagatttatatttgtggttgcgacccgtatatgtcttttggttgtaacannnnnnnnactgtttt |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
7844801 |
aaaacacataaactttcttaatgtgtgcaatgatttagatttatatttgtggttgcgacccgtat--gtcttttggttgtaacattttttt-actgtttt |
7844705 |
T |
|
| Q |
123 |
tgttaa-tcctcaggctacaaatcgatcttgtaggaattagtttagatccaattcaaattctaatagacaattcataagataattaagaaaagtaaatca |
221 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7844704 |
tgttaaatcctcaggctacaaatcgatcttgtaggaattagtttagatccaattcaaattctaatagacaattcataagataattaagaaaagtaaatca |
7844605 |
T |
|
| Q |
222 |
agtgaaaagaccactcttcataagtaaattaattggttaatccaaataaaacaactcggaataagataataagaaaagtaaaagtgggggaatgtgctaa |
321 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7844604 |
agtgaaaagaccactcttcgtaagtaaattaattggttaatccaaataaaacaactcggaataagataataagaaaagtaaaagtgggggaatgtgctaa |
7844505 |
T |
|
| Q |
322 |
ctactctcctggaaattagattttcagagattaagaatcatgcatgtgtatactatacacatatgtccactactaaagattctttatttagtgaccaatt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7844504 |
ctactctcctggaaattagattttcagaaattaagaatcatgcatgtgtatactatacacatatgtccactactaaaaattctttatttagtgaccaatt |
7844405 |
T |
|
| Q |
422 |
ttccaaaccttaaatgtgtgtttgcaattattattgcagaagtttggggttggaaaatgatgatgccactcaaaacatgaggcataaagctgaagaagag |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7844404 |
ttccaaaccttaaatgtgtgtttgcaattattattgcagaagtttggggttggaaaataatgatgccactcaaaacatgaggcataaagctgaagaagag |
7844305 |
T |
|
| Q |
522 |
accaatgccattgatgatgt |
541 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7844304 |
accaatgccattgatgatgt |
7844285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 427 - 517
Target Start/End: Complemental strand, 7843423 - 7843333
Alignment:
| Q |
427 |
aaccttaaatgtgtgtttgcaattattattgcagaagtttggggttggaaaatgatgatgccactcaaaacatgaggcataaagctgaaga |
517 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||| | ||||||||||||| |
|
|
| T |
7843423 |
aaccttaaatgtgtgtttgcaattattgttgcagaagtttggggttagaaaatgatgattgcacccaaaacatgaagtataaagctgaaga |
7843333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 242 - 374
Target Start/End: Complemental strand, 7843731 - 7843596
Alignment:
| Q |
242 |
taagtaaattaattggttaatccaaataaa--acaactcggaataagataataagaaaagtaaaagtggggga-atgtgctaactactctcctggaaatt |
338 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| | ||| |||||||| ||||||||||||| || |
|
|
| T |
7843731 |
taagtaaatcaattggttaatccaaataaacaacaacttggaataagataacaagaaaagtaaaagttgaggatatgtgctagttactctcctggaagtt |
7843632 |
T |
|
| Q |
339 |
agattttcagagattaagaatcatgcatgtgtatac |
374 |
Q |
| |
|
| ||| ||| ||||||||| |||||||||||||| |
|
|
| T |
7843631 |
acgatttgagaaattaagaattatgcatgtgtatac |
7843596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University