View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1756_high_20 (Length: 278)
Name: NF1756_high_20
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1756_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 48450108 - 48449858
Alignment:
| Q |
18 |
acttcttgcccaccttcttcttcatcgtcataatccgccatacaaacactgtcatcgtcacaatcacattcaccagatgtataatcgtcgcacatcacgt |
117 |
Q |
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| T |
48450108 |
acttcttgcccaccttcttcttcatcgtcataatccgctatacaaacactgtcatcgtcacaatcacattcaccagatgtataatcgtcgcacatcacgt |
48450009 |
T |
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| Q |
118 |
ccatatcaacgctttctttcggtaacctgtttctccaatgtttcttaatttccacaagcctctctatccaattagctctatttactctctcttcattact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48450008 |
ccatatcaacgctttctttcggtaacctgtttctccaatgtttcttaatttccacaagcctctctatccaattagctctatttactctctcttcattact |
48449909 |
T |
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| Q |
218 |
agtttccaccatgttttcctcaatatttacatccttctcatttttattcat |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48449908 |
agtttccaccatgttttcctcaatatttacatccttctcccttttattcat |
48449858 |
T |
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