View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1756_high_4 (Length: 480)

Name: NF1756_high_4
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1756_high_4
NF1756_high_4
[»] chr5 (22 HSPs)
chr5 (69-465)||(43025130-43025526)
chr5 (69-238)||(35064091-35064270)
chr5 (69-170)||(42815210-42815311)
chr5 (328-422)||(35063718-35063813)
chr5 (1-68)||(26283438-26283505)
chr5 (1-69)||(36293741-36293809)
chr5 (1-68)||(39434676-39434743)
chr5 (1-65)||(13817960-13818024)
chr5 (272-322)||(35063853-35063903)
chr5 (1-65)||(10033910-10033974)
chr5 (1-64)||(1776496-1776559)
chr5 (1-47)||(12278980-12279026)
chr5 (1-68)||(3155751-3155818)
chr5 (369-423)||(42814804-42814859)
chr5 (8-47)||(31680368-31680407)
chr5 (5-47)||(17332675-17332717)
chr5 (1-47)||(31501836-31501882)
chr5 (1-47)||(37254642-37254688)
chr5 (275-321)||(42815062-42815109)
chr5 (12-65)||(14316641-14316694)
chr5 (1-46)||(19985941-19985986)
chr5 (1-69)||(39657626-39657694)
[»] chr4 (27 HSPs)
chr4 (1-69)||(13012167-13012235)
chr4 (1-68)||(20129290-20129357)
chr4 (1-68)||(47500753-47500820)
chr4 (1-68)||(26439399-26439466)
chr4 (1-68)||(34407404-34407471)
chr4 (1-68)||(25930688-25930755)
chr4 (1-64)||(36382465-36382528)
chr4 (1-68)||(43355884-43355951)
chr4 (1-47)||(30216862-30216908)
chr4 (1-46)||(30109958-30110003)
chr4 (1-46)||(43143704-43143749)
chr4 (1-65)||(17511354-17511417)
chr4 (1-68)||(29319825-29319892)
chr4 (1-65)||(40528996-40529062)
chr4 (1-47)||(6690355-6690401)
chr4 (1-45)||(3293016-3293060)
chr4 (7-69)||(7769307-7769369)
chr4 (1-47)||(10353004-10353050)
chr4 (1-47)||(50205197-50205243)
chr4 (11-47)||(49908782-49908818)
chr4 (1-48)||(42333896-42333943)
chr4 (1-47)||(26448054-26448100)
chr4 (4-65)||(6235515-6235576)
chr4 (16-65)||(27363344-27363393)
chr4 (1-42)||(29996103-29996144)
chr4 (1-46)||(45194178-45194223)
chr4 (11-47)||(5517494-5517530)
[»] chr2 (14 HSPs)
chr2 (1-69)||(6403924-6403992)
chr2 (1-68)||(41251754-41251821)
chr2 (1-68)||(42439966-42440033)
chr2 (4-68)||(17445162-17445226)
chr2 (1-69)||(32127261-32127329)
chr2 (1-68)||(35962695-35962762)
chr2 (9-68)||(2958228-2958287)
chr2 (1-68)||(18981597-18981663)
chr2 (1-47)||(8147352-8147398)
chr2 (1-47)||(44084723-44084769)
chr2 (1-47)||(45418584-45418630)
chr2 (4-69)||(16405579-16405644)
chr2 (1-42)||(771005-771046)
chr2 (9-47)||(26237958-26237996)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-68)||(480577-480644)
[»] chr7 (12 HSPs)
chr7 (1-68)||(14777227-14777294)
chr7 (1-68)||(5555467-5555534)
chr7 (1-64)||(8394109-8394172)
chr7 (1-69)||(3114216-3114284)
chr7 (1-64)||(36630800-36630863)
chr7 (1-47)||(34389176-34389222)
chr7 (5-47)||(8867855-8867897)
chr7 (1-47)||(37002264-37002310)
chr7 (1-47)||(33685565-33685611)
chr7 (1-39)||(35090177-35090215)
chr7 (1-30)||(36658199-36658228)
chr7 (3-35)||(10876829-10876861)
[»] chr6 (8 HSPs)
chr6 (1-68)||(398597-398664)
chr6 (1-68)||(34948878-34948945)
chr6 (1-68)||(13837801-13837868)
chr6 (1-47)||(18339107-18339153)
chr6 (1-47)||(31028484-31028530)
chr6 (1-47)||(28996731-28996777)
chr6 (12-47)||(13647018-13647053)
chr6 (1-42)||(29743289-29743330)
[»] chr3 (16 HSPs)
chr3 (1-68)||(6269546-6269613)
chr3 (1-68)||(22968564-22968631)
chr3 (1-64)||(34084242-34084305)
chr3 (1-68)||(39771770-39771837)
chr3 (1-68)||(19390126-19390193)
chr3 (1-47)||(45182982-45183028)
chr3 (1-69)||(11018332-11018400)
chr3 (5-68)||(6503693-6503756)
chr3 (1-64)||(22922141-22922204)
chr3 (1-47)||(6931014-6931060)
chr3 (1-47)||(45335876-45335922)
chr3 (1-44)||(27935182-27935225)
chr3 (1-47)||(19565621-19565667)
chr3 (5-47)||(33040954-33040996)
chr3 (11-47)||(6890999-6891035)
chr3 (1-65)||(40081859-40081922)
[»] chr1 (7 HSPs)
chr1 (1-68)||(26144235-26144302)
chr1 (1-68)||(7433425-7433492)
chr1 (1-71)||(41972395-41972464)
chr1 (1-61)||(32982176-32982236)
chr1 (1-65)||(42311061-42311125)
chr1 (1-47)||(35907553-35907599)
chr1 (1-68)||(23313218-23313286)
[»] scaffold2142 (1 HSPs)
scaffold2142 (1-69)||(501-569)
[»] chr8 (10 HSPs)
chr8 (1-68)||(39914495-39914562)
chr8 (1-75)||(29728506-29728580)
chr8 (1-64)||(15838270-15838333)
chr8 (1-69)||(34136945-34137013)
chr8 (1-44)||(16788145-16788188)
chr8 (1-47)||(4404009-4404055)
chr8 (1-47)||(36408552-36408598)
chr8 (1-47)||(2729316-2729362)
chr8 (5-47)||(23402109-23402151)
chr8 (1-65)||(3648914-3648978)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-69)||(17821-17889)
[»] scaffold0502 (1 HSPs)
scaffold0502 (1-47)||(5231-5277)
[»] scaffold0154 (1 HSPs)
scaffold0154 (3-47)||(31481-31525)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 69 - 465
Target Start/End: Complemental strand, 43025526 - 43025130
Alignment:
Q  69 ggtacattgaaacaaagtatatttgtatccaagcatttgggaaggggtaccgattttgaccttctggtcaccaacgctcagaccaatgaaggtcggttct 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43025526 ggtacattgaaacaaagtatatttgtatccaagcatttgggaaggggtactgattttgaccttctggtcaccaacgctcagaccaatgaaggtcggttct 43025427  T
Q  169 taatcttgatcgtttttaactgttttcatcgttactgtactaggatttattgattttcttgattagggttcttaatannnnnnngagaaaatgaattaat 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  43025426 taatcttgatcgtttttaactgttttcatcgttactgtactaggatttattgattttcttgattagggttcttaatatttttttgagaaaatgaattaat 43025327  T
Q  269 cgactcgattagggtttatatttgatgcttgattgtaaactgagttttaagttgagagaaaatgaattaatcgaatgtaatcggtgtcagatagcgtagt 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43025326 cgactcgattagggtttatatttgatgcttgattgtaaactgagttttaagttgagagaacatgaattaatcgaatgtaatcggtgtcagatagcgtagt 43025227  T
Q  369 gacactgtcacctttgattagaggtgtctgtcctatagaagttctgagtgttctgagtgttcgtctttgcaatatcgtgctcatgcatattatatgt 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43025226 gacactgtcacctttgattagaggtgtctgtcctatagaagttctgagtgttctgagtgttcgtctttgcaatatcgtgctcatgcatattatatgt 43025130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 69 - 238
Target Start/End: Complemental strand, 35064270 - 35064091
Alignment:
Q  69 ggtacattgaaacaaagtatatttgtatccaagcatttgggaaggggtaccgattttgaccttctggtcaccaacgctcagaccaatgaaggtcggttct 168  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||    
T  35064270 ggtacattgaaacaaagtatatttgtatccaagcgttttggaaggggtactgattttgaccttctggttactaacgctcagaccaatgaaggtcggttct 35064171  T
Q  169 taatcttgatcgttt-----ttaactgttttcatcgttac-----tgtactaggatttattgattttcttgattagggtt 238  Q
    |||||| ||||||||     ||||||||||||||| ||||     | |||||||||||||||||||||||||||||||||    
T  35064170 taatctcgatcgtttttaatttaactgttttcatccttacggttgtatactaggatttattgattttcttgattagggtt 35064091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 42815311 - 42815210
Alignment:
Q  69 ggtacattgaaacaaagtatatttgtatccaagcatttgggaaggggtaccgattttgaccttctggtcaccaacgctcagaccaatgaaggtcggttct 168  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42815311 ggtacattgaaacaaagtatatttgtatccaagcatttaggaaggggtactgattttgaccttctggtcaccaacgctcagaccaatgaaggtcggttct 42815212  T
Q  169 ta 170  Q
    ||    
T  42815211 ta 42815210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 328 - 422
Target Start/End: Complemental strand, 35063813 - 35063718
Alignment:
Q  328 aaatgaattaatcgaatgtaatcggtgtcagatagcgtagt-gacactgtcacctttgattagaggtgtctgtcctatagaagttctgagtgttct 422  Q
    ||||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||    
T  35063813 aaatgaattaaccgaatataatccgtgtcagatagtgtagtagacactgtcacctttgattagaggtgtctgtgctatagatgttctgggtgttct 35063718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 26283438 - 26283505
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||    
T  26283438 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgctacacggtggaaccgcccatg 26283505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 36293741 - 36293809
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 69  Q
    ||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||    
T  36293741 aatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgccacacggtagaaccgcccatgg 36293809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 39434743 - 39434676
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  39434743 aatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgccacacggtagaaccgcccatg 39434676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 13818024 - 13817960
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgccc 65  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||| | |||||||||||||||    
T  13818024 aatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgccatacggtagaaccgccc 13817960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 35063903 - 35063853
Alignment:
Q  272 ctcgattagggtttatatttgatgcttgattgtaaactgagttttaagttg 322  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35063903 ctcgattagggtttatatctgatgcttgattgtaaactgagttttaagttg 35063853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 10033974 - 10033910
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgccc 65  Q
    |||||||||||||||||||||||| |||||||| || |||||||||| | |||||||||||||||    
T  10033974 aatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgccatacggtagaaccgccc 10033910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1776496 - 1776559
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcc 64  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||  | ||||||||||||||    
T  1776496 aatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcatacggtagaaccgcc 1776559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12278980 - 12279026
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  12278980 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgc 12279026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3155751 - 3155818
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||| ||||||| ||| ||||||||||||| |||| | ||| ||||||||||||||    
T  3155751 aatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgccatacgatagaaccgcccatg 3155818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 423
Target Start/End: Complemental strand, 42814859 - 42814804
Alignment:
Q  369 gacactgtcacctttgattagagg-tgtctgtcctatagaagttctgagtgttctg 423  Q
    ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  42814859 gacactggcacctttgattagagggtgtctgtgctatagaagttctgagtgttctg 42814804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 31680407 - 31680368
Alignment:
Q  8 aaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  31680407 aaaaattatcgatcgagcccgggcgaccgcccggggtcgc 31680368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 17332675 - 17332717
Alignment:
Q  5 tgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  17332675 tgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgc 17332717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31501836 - 31501882
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||||||||||| |||||| | |||||||||||||    
T  31501836 aatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgc 31501882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37254688 - 37254642
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||||||||||| | ||||||||||| ||||||||    
T  37254688 aatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgc 37254642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 42815109 - 42815062
Alignment:
Q  275 gattagggtttatatttgatgcttga-ttgtaaactgagttttaagtt 321  Q
    |||||||||||||||||||||||| | ||||||||| |||||||||||    
T  42815109 gattagggtttatatttgatgcttaatttgtaaactaagttttaagtt 42815062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 14316694 - 14316641
Alignment:
Q  12 attatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgccc 65  Q
    ||||||||||||| | ||||||||||||| | |||| | |||||||||||||||    
T  14316694 attatcgatcgagcctgggcgaccgcccgagatcgccatacggtagaaccgccc 14316641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19985986 - 19985941
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcg 46  Q
    ||||||||||||||||||||||||  ||| |||||||||| |||||    
T  19985986 aatgtgcaaaaattatcgatcgagctcggacgaccgcccgaggtcg 19985941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 39657626 - 39657694
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 69  Q
    ||||||||||||||||| |||||| |||  |||||| | |||||||| | |  ||||||||||||||||    
T  39657626 aatgtgcaaaaattatcaatcgagcccgaacgaccgtctggggtcgccatatagtagaaccgcccatgg 39657694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 13012235 - 13012167
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 69  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  13012235 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatgg 13012167  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 20129357 - 20129290
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  20129357 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 20129290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 47500820 - 47500753
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  47500820 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 47500753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 26439399 - 26439466
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  26439399 aatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 26439466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34407404 - 34407471
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  34407404 aatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 34407471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 25930755 - 25930688
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||| | ||||||||||||||||||    
T  25930755 aatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgccatacggtagaaccgcccatg 25930688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36382465 - 36382528
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcc 64  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||| | ||||||||||||||    
T  36382465 aatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcc 36382528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 43355951 - 43355884
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    ||||||||||||||||||| |||| ||||||||| ||| |||||||||||||||| ||||||||||||    
T  43355951 aatgtgcaaaaattatcgaccgagcccgggcgactgcctggggtcgctacacggtggaaccgcccatg 43355884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30216862 - 30216908
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  30216862 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 30216908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30110003 - 30109958
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcg 46  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  30110003 aatgtgcaaaaattatcgatcgagtccgggcgaccgtccggggtcg 30109958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43143704 - 43143749
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcg 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  43143704 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcg 43143749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 17511354 - 17511417
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgccc 65  Q
    |||||||||||||||||||||||||| ||||||||| || ||||||| | |||||||||||||||    
T  17511354 aatgtgcaaaaattatcgatcgagtctgggcgaccg-ccagggtcgccatacggtagaaccgccc 17511417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 29319825 - 29319892
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||| | || |||||||| |||||| | | ||||||||||||||||||    
T  29319825 aatgtgcaaaaattatcgatcgagcctggacgaccgccaggggtcaccatacggtagaaccgcccatg 29319892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 40529062 - 40528996
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgac--cgcccggggtcgctacacggtagaaccgccc 65  Q
    ||||||||||||||||||||||||||||| ||||  ||||| ||||||| | |||||||||||||||    
T  40529062 aatgtgcaaaaattatcgatcgagtccggacgacctcgcccagggtcgccatacggtagaaccgccc 40528996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6690355 - 6690401
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  6690355 aatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 6690401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3293016 - 3293060
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtc 45  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||    
T  3293016 aatgggcaaaaattatcgatcgagcccgggcgaccgcccggggtc 3293060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 7769369 - 7769307
Alignment:
Q  7 caaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 69  Q
    |||||||||||||||||| ||||||||||||| ||||||||   |||||  ||||||||||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgcccatgg 7769307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10353004 - 10353050
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  10353004 aatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgc 10353050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 50205197 - 50205243
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||    
T  50205197 aatgtgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgc 50205243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 49908782 - 49908818
Alignment:
Q  11 aattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||| ||||||||||||||||||||||    
T  49908782 aattatcgatcgagcccgggcgaccgcccggggtcgc 49908818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 42333896 - 42333943
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgct 48  Q
    |||||||||||||||||||| ||| |||| |||||||||||| |||||    
T  42333896 aatgtgcaaaaattatcgattgagcccggacgaccgcccgggatcgct 42333943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26448100 - 26448054
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    ||||||||||||||||||||||||||||| ||| ||| ||| |||||    
T  26448100 aatgtgcaaaaattatcgatcgagtccggacgatcgcacggagtcgc 26448054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 6235576 - 6235515
Alignment:
Q  4 gtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgccc 65  Q
    ||||||||||||||| ||||| ||| |||||||||| |  |||| | |||||||||||||||    
T  6235576 gtgcaaaaattatcggtcgagcccgagcgaccgcccagaatcgccatacggtagaaccgccc 6235515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 27363393 - 27363344
Alignment:
Q  16 tcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgccc 65  Q
    ||||||||| ||||||||||||||| |||||| | |||||| ||||||||    
T  27363393 tcgatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccgccc 27363344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29996103 - 29996144
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggg 42  Q
    ||||| ||||||||||||||||||||||| |||||| |||||    
T  29996103 aatgtacaaaaattatcgatcgagtccggacgaccgtccggg 29996144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45194223 - 45194178
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcg 46  Q
    |||||||||||||||| |||||||||||||| | |||| |||||||    
T  45194223 aatgtgcaaaaattattgatcgagtccgggcaatcgcctggggtcg 45194178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 5517494 - 5517530
Alignment:
Q  11 aattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||| || |||||||||||||||||||    
T  5517494 aattatcgatcgagcccaggcgaccgcccggggtcgc 5517530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6403924 - 6403992
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 69  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  6403924 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatgg 6403992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 41251754 - 41251821
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  41251754 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcactacacggtagaaccgcccatg 41251821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 42440033 - 42439966
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||    
T  42440033 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccatg 42439966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 17445162 - 17445226
Alignment:
Q  4 gtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||  |||||||||||||| |||||| ||||||||||||||||||||    
T  17445162 gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgccacacggtagaaccgcccatg 17445226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32127261 - 32127329
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 69  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||| | ||| |||||||||||||||    
T  32127261 aatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgccatacgctagaaccgcccatgg 32127329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 35962762 - 35962695
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||| |||| |||||||| |||||||| | ||||||||||||||||||    
T  35962762 aatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgccatacggtagaaccgcccatg 35962695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 2958228 - 2958287
Alignment:
Q  9 aaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||    
T  2958228 aaaattatcgatcgagcccggacgaccgcccggggtcgccatacggtagaaccgcccatg 2958287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 18981663 - 18981597
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    ||||||||||||||||| |||||| |||| ||||||||| ||||||| | ||||||||||||||||||    
T  18981663 aatgtgcaaaaattatcaatcgagcccggacgaccgccc-gggtcgccatacggtagaaccgcccatg 18981597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8147398 - 8147352
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  8147398 aatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgc 8147352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 44084723 - 44084769
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||    
T  44084723 aatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 44084769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 45418630 - 45418584
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  45418630 aatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 45418584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 16405644 - 16405579
Alignment:
Q  4 gtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 69  Q
    ||||||||||||||||| ||| |||||||||||||| ||||| | | | |||||||||||||||||    
T  16405644 gtgcaaaaattatcgattgagcccgggcgaccgcccagggtcaccatatggtagaaccgcccatgg 16405579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 771046 - 771005
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggg 42  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  771046 aatgtgcaaaagttatcgatcgagcccgggcgaccgcccggg 771005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 26237996 - 26237958
Alignment:
Q  9 aaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  26237996 aaaaatatcgatcgagcccgggcgaccgcccggggtcgc 26237958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 480577 - 480644
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  480577 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 480644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 14777227 - 14777294
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  14777227 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtagaaccgcccatg 14777294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 5555534 - 5555467
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||    
T  5555534 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccatg 5555467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 8394172 - 8394109
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcc 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||    
T  8394172 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcc 8394109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 3114216 - 3114284
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 69  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| | | |||||||||||||||||||    
T  3114216 aatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcaccatacggtagaaccgcccatgg 3114284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36630863 - 36630800
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcc 64  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||| | ||||||||||||||    
T  36630863 aatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccatacggtagaaccgcc 36630800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34389176 - 34389222
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  34389176 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 34389222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 8867855 - 8867897
Alignment:
Q  5 tgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  8867855 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 8867897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37002264 - 37002310
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||    
T  37002264 aatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgc 37002310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33685611 - 33685565
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||||||||||| ||| ||||| ||| ||||||||    
T  33685611 aatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgc 33685565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35090215 - 35090177
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgccc 39  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  35090215 aatgtgcaaaaattattgatcgagcccgggcgaccgccc 35090177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 36658228 - 36658199
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccggg 30  Q
    ||||||||||||||||||||||||||||||    
T  36658228 aatgtgcaaaaattatcgatcgagtccggg 36658199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 10876829 - 10876861
Alignment:
Q  3 tgtgcaaaaattatcgatcgagtccgggcgacc 35  Q
    |||||||||||||||||||||| ||||||||||    
T  10876829 tgtgcaaaaattatcgatcgagcccgggcgacc 10876861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 398664 - 398597
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  398664 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 398597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34948878 - 34948945
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||| | ||||||||||| |||||||| | ||||||||||||||||||    
T  34948878 aatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccatacggtagaaccgcccatg 34948945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 13837868 - 13837801
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    ||||| |||||||||||||||||  ||| |||| ||||||||||||| | ||||||||||||||||||    
T  13837868 aatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgccatacggtagaaccgcccatg 13837801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18339153 - 18339107
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  18339153 aatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgc 18339107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31028484 - 31028530
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  31028484 aatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgc 31028530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28996777 - 28996731
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||    
T  28996777 aatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 28996731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 13647053 - 13647018
Alignment:
Q  12 attatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    ||||||||||||| ||||||||||||||||||||||    
T  13647053 attatcgatcgagcccgggcgaccgcccggggtcgc 13647018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29743330 - 29743289
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggg 42  Q
    |||||||||||||||||||| ||| |||||| ||||||||||    
T  29743330 aatgtgcaaaaattatcgattgagcccgggcaaccgcccggg 29743289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 6269546 - 6269613
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  6269546 aatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgctacacggtagaaccgcccatg 6269613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 22968564 - 22968631
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  22968564 aatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgctacacggtagaaccgcccatg 22968631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34084242 - 34084305
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcc 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  34084242 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgccatacggtagaaccgcc 34084305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 39771837 - 39771770
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  39771837 aatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 39771770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19390193 - 19390126
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||| ||||||||||||| ||||||    
T  19390193 aatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgccacacggtagaacctcccatg 19390126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 45183028 - 45182982
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  45183028 aatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 45182982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11018332 - 11018400
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 69  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||   |||||  ||||||||||||    
T  11018332 aatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaaaccgcccatgg 11018400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 6503693 - 6503756
Alignment:
Q  5 tgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    ||||||||| |||||||||| ||||||||||||||||||||||   |||||  |||||||||||    
T  6503693 tgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcccatg 6503756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 22922204 - 22922141
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcc 64  Q
    ||||||||||||| |||||||||| ||| ||||||||||||| |||| | ||||| ||||||||    
T  22922204 aatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgccatacggtggaaccgcc 22922141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6931014 - 6931060
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  6931014 aatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgc 6931060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 45335922 - 45335876
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  45335922 aatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgc 45335876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 27935225 - 27935182
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggt 44  Q
    |||||||||||||||||||||||| ||||||||| |||| ||||    
T  27935225 aatgtgcaaaaattatcgatcgagcccgggcgactgcccagggt 27935182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19565621 - 19565667
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||||||| ||  ||||||||||||||||| ||||    
T  19565621 aatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgc 19565667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 33040996 - 33040954
Alignment:
Q  5 tgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||    
T  33040996 tgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgc 33040954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 6891035 - 6890999
Alignment:
Q  11 aattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||| |||||||||||||||| |||||    
T  6891035 aattatcgatcgagcccgggcgaccgcccggtgtcgc 6890999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 40081859 - 40081922
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgccc 65  Q
    ||||| |||||||||||||||||| ||||||||||  || | ||||| | |||||||||||||||    
T  40081859 aatgttcaaaaattatcgatcgagcccgggcgacc-tccagagtcgccatacggtagaaccgccc 40081922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 26144302 - 26144235
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  26144302 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 26144235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7433492 - 7433425
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||| |||||||  |||||||||||||||||| || | ||||||||||||||||||    
T  7433492 aatgtgcaaaaattatagatcgagctcgggcgaccgcccggggttgccatacggtagaaccgcccatg 7433425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 41972395 - 41972464
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatgggt 71  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||  ||||| ||||||||| |||||    
T  41972395 aatgtgcaaaaattatcgatcgag-ccaggcgaccgcccggggtcgctggacggtggaaccgcccctgggt 41972464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 32982176 - 32982236
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaacc 61  Q
    |||||||||||||||||||||| | ||| |||||||||||||||||| | |||||||||||    
T  32982176 aatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgccatacggtagaacc 32982236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 42311061 - 42311125
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgccc 65  Q
    |||||||||||||||||||||||| |||||||| || | |||||||| | |||||||||||||||    
T  42311061 aatgtgcaaaaattatcgatcgagcccgggcgatcgtctggggtcgccatacggtagaaccgccc 42311125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35907599 - 35907553
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    ||||||||||||||||||||| || ||||||||||||||| ||||||    
T  35907599 aatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgc 35907553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 23313286 - 23313218
Alignment:
Q  1 aatgtgcaa-aaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    ||||||||| |||| ||| |||||| |||||| |||||||| | |||| | ||||||||||||||||||    
T  23313286 aatgtgcaacaaatcatcaatcgagcccgggcaaccgcccgagatcgccatacggtagaaccgcccatg 23313218  T

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Target: scaffold2142 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 569 - 501
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 69  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||    
T  569 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtggaaccgcccatgg 501  T

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Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 39914562 - 39914495
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatg 68  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  39914562 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgtccatg 39914495  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 29728506 - 29728580
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatgggtacat 75  Q
    ||||||||||| ||||||||||||  |||||||||| |||||||||| | ||||||||||||||| |||||||||    
T  29728506 aatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgccatacggtagaaccgcccctgggtacat 29728580  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 15838333 - 15838270
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcc 64  Q
    ||||||||||||||||| |||||| ||||| |||||||||||||||| | ||||||||||||||    
T  15838333 aatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgccatacggtagaaccgcc 15838270  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34136945 - 34137013
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 69  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||| | |||||  |||| |||||||    
T  34136945 aatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaaaccacccatgg 34137013  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 16788145 - 16788188
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggt 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  16788145 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggt 16788188  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4404055 - 4404009
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  4404055 aatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgc 4404009  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36408598 - 36408552
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||    
T  36408598 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgc 36408552  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2729316 - 2729362
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  2729316 aatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgc 2729362  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 23402151 - 23402109
Alignment:
Q  5 tgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||| ||||||||||||| ||||||||||||||||||||||    
T  23402151 tgcaaagattatcgatcgagcccgggcgaccgcccggggtcgc 23402109  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3648914 - 3648978
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgccc 65  Q
    |||||| ||||||||||||||||| ||||||||| | || || |||| | |||||||||||||||    
T  3648914 aatgtgaaaaaattatcgatcgagcccgggcgactgtcccggatcgccatacggtagaaccgccc 3648978  T

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Target: scaffold0069 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17889 - 17821
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 69  Q
    |||||||||||||||||||||||| |||| ||| ||| ||||||||| |||||||||||||||||||||    
T  17889 aatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgccacacggtagaaccgcccatgg 17821  T

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Target: scaffold0502 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5277 - 5231
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  5277 aatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgc 5231  T

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Target: scaffold0154 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 31525 - 31481
Alignment:
Q  3 tgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 47  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||    
T  31525 tgtgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgc 31481  T

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