View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1756_high_6 (Length: 395)
Name: NF1756_high_6
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1756_high_6 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0013 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 128 - 385
Target Start/End: Complemental strand, 92037 - 91779
Alignment:
| Q |
128 |
atattaactcttatttttacttctattattatgattataatggatggtatacatataattaaattatttttctatcaatacaactcagagtttgggtagc |
227 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
92037 |
atattaactcttatttttacttctgttattatgattataatggatggtatacacataattaaattatttttctatcaatacaactcagagtttgggtagc |
91938 |
T |
|
| Q |
228 |
caaggatggaatactagtttttctgttcaagctttgcttgccactggcctaactgaggaaattggtccagtacttgcg-aaggtcatgatttcatcaaga |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
91937 |
caaggatggaatactagtttttctgttcaagctttgcttgccactggcctaactgaggaaattggcccagtacttgcgaaaggtcatgatttcatcaaga |
91838 |
T |
|
| Q |
327 |
aatcacaggtaagtttaattttgttgatagataatgtagttggcactatttattatttt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91837 |
aatcacaggtaagtttaattttgttgatagataatgtagttggcactatttattatttt |
91779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 349
Target Start/End: Original strand, 104554 - 104719
Alignment:
| Q |
185 |
attaaattatttttctatcaatacaactcagagtttgggtagccaaggatggaatactagtttttctgttcaagctttgcttgccactggcctaactgag |
284 |
Q |
| |
|
||||||| ||||| || ||||||||| |||||||| |||||||||| |||| || || ||||| | |||||||||||||||||| || ||||| ||| |
|
|
| T |
104554 |
attaaataattttcctgtcaatacaatgcagagttttggtagccaagaatgggatgctggttttgccgttcaagctttgcttgccgctaacctaaatgat |
104653 |
T |
|
| Q |
285 |
gaaattggtccagtacttg-cgaaggtcatgatttcatcaagaaatcacaggtaagtttaattttg |
349 |
Q |
| |
|
||||| | || | ||||| | |||| ||||||||||| |||||||| |||||| ||||||||||| |
|
|
| T |
104654 |
gaaatcgaacctgcacttgccaaaggacatgatttcattaagaaatctcaggtatgtttaattttg |
104719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 349
Target Start/End: Original strand, 165170 - 165325
Alignment:
| Q |
195 |
ttttctatcaatacaactcagagtttgggtagccaaggatggaatactagtttttctgttcaagctttgcttgccactggcctaactgaggaaattggtc |
294 |
Q |
| |
|
|||| ||||||||||| |||| ||| || ||||||| |||| ||||||||||| | ||||||||||||||||||| ||||| |||||||| || || |
|
|
| T |
165170 |
ttttgtatcaatacaatgcagacttttgggagccaagtatgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaactgctc |
165269 |
T |
|
| Q |
295 |
cagtacttg-cgaaggtcatgatttcatcaagaaatcacaggtaagtttaattttg |
349 |
Q |
| |
|
| | ||||| |||| |||||||||||||||||||| |||||| | ||||||||| |
|
|
| T |
165270 |
ctgcacttgtaaaaggacatgatttcatcaagaaatctcaggtatgcttaattttg |
165325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 348
Target Start/End: Complemental strand, 5669619 - 5669526
Alignment:
| Q |
256 |
aagctttgcttgccactggcctaactgaggaaattggtccagtacttgc-gaaggtcatgatttcatcaagaaatcacaggtaagtttaatttt |
348 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||| ||| || |||| ||||| |||||||||||||| |||||| | |||||||| |
|
|
| T |
5669619 |
aagctttgcttgccactaacctaactgaggatattggtccaacactggcaaaaggacatgaattcatcaagaaatctcaggtatgcttaatttt |
5669526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 5690279 - 5690183
Alignment:
| Q |
253 |
ttcaagctttgcttgccactggcctaactgaggaaattggtccagtacttgc-gaaggtcatgatttcatcaagaaatcacaggtaagtttaatttt |
348 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| ||||||||| |||||| |||| ||| | ||||||||||| || |||||| ||||| |||| |
|
|
| T |
5690279 |
ttcaagctttgcttgccactaacctaattgaggatattggtccaacacttgcaaaaggacataaattcatcaagaattctcaggtatgtttagtttt |
5690183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 337
Target Start/End: Original strand, 13053152 - 13053276
Alignment:
| Q |
214 |
agagtttgggtagccaaggatggaatactagtttttctgttcaagctttgcttgccactggcctaactgaggaaattggtccagtacttgcga-aggtca |
312 |
Q |
| |
|
||||||| ||||| |||| |||| || | ||||| |||||||||||||||||||||| | ||| ||| ||||||||||| | |||||| | ||| || |
|
|
| T |
13053152 |
agagttttggtagtcaagaatgggatgcaggttttgctgttcaagctttgcttgccacaaacttaattgaagaaattggtcctgcacttgccagaggaca |
13053251 |
T |
|
| Q |
313 |
tgatttcatcaagaaatcacaggta |
337 |
Q |
| |
|
||| |||||||||||||| |||||| |
|
|
| T |
13053252 |
tgacttcatcaagaaatctcaggta |
13053276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University