View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1756_high_8 (Length: 375)
Name: NF1756_high_8
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1756_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 310
Target Start/End: Complemental strand, 26143782 - 26143482
Alignment:
| Q |
10 |
attattctatgctggaagccatggaatggatattaagggtccaacaaataggagaagcactaaaaaagtgagaaataatttctcaatccaaattattgcg |
109 |
Q |
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| T |
26143782 |
attatactatgctggaagccatgggatggatattaagggtccaacaaataggagaagcactaaaaaagtgagaaataatttctctatccaaattattgcg |
26143683 |
T |
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| Q |
110 |
acggagattattatattttgttgttattttaactaatttcatctattattatttcagggtaataatgatggggtacttttgcagcctgctagtgaatttt |
209 |
Q |
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| T |
26143682 |
acggagattattatattttgttgttattttaactaatttcatctatttttatttcagggtaataatgatggggtacttttgcagcctgctagtgaatttt |
26143583 |
T |
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| Q |
210 |
tgcccatgatcaatgaggttcgtagcttttaattaattattacgaccaaaattttttagttacaccattcccattaggtatgggattttaactgtgccta |
309 |
Q |
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| T |
26143582 |
tgcccatgatcaatgaggttcgtagcttttaattaattattaccaccaaaattttttagttacaccattcccattaggtatgggattttaactgtgccta |
26143483 |
T |
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| Q |
310 |
a |
310 |
Q |
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| T |
26143482 |
a |
26143482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 53634057 - 53633815
Alignment:
| Q |
16 |
ctatgctggaagccatggaatggatattaagggtccaacaaataggagaagcactaaaaaagtgagaaataatttctcaatccaaattattgcgacggag |
115 |
Q |
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| T |
53634057 |
ctatactggaagccatgggatggatatcaagggaccaacaaataggagaagcaataaaaaagtgagaaataatttctctatccaaattattgcgacggag |
53633958 |
T |
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| Q |
116 |
attattatattttg----ttgttattttaac--taatttcatctattattatttcagggtaataatgat-ggggtacttttgcagcctgctagtgaattt |
208 |
Q |
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| T |
53633957 |
attattatattttgttttttttttttttaacaaaaaagaaatctattattatttcagggtaataatgatgggggtacttttgcagtctgctagtgaattc |
53633858 |
T |
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| Q |
209 |
ttgcccatgatcaatgaggttcgtagcttttaattaattatta |
251 |
Q |
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| T |
53633857 |
ttgccaattatcaatgaggttcgtagcttttaattaattatta |
53633815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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