View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1756_low_1 (Length: 747)
Name: NF1756_low_1
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1756_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-163; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 262 - 582
Target Start/End: Complemental strand, 540893 - 540571
Alignment:
| Q |
262 |
aaacaattttgaaacattggatactagggaattgtcctgtccctgtccttgccaatttatttaacgtttgcattgctgtctgtctgcatatatacaattg |
361 |
Q |
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| T |
540893 |
aaacaatttttaaacattggataccagggaattgtcctgtccctgtccttgccaatttatttaacgtttgcattgctgtctgtctgcatatatacaattg |
540794 |
T |
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| Q |
362 |
tgcctcagagacttgtttctttcctctattagtaacctcttctctctct--atttcaaaagtgaatagtgccattcttcgatggaaatcatagagggagt |
459 |
Q |
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| T |
540793 |
tgcctcagagacttgtttctttcctctattagtaacctcttctctctctctatttcaaaagtgaatagtgccattcttcaatggaaatcatagtgggagt |
540694 |
T |
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| Q |
460 |
agtgcacgtgataaacacaattaatatttatatagtatttcaaattgttttatcacatgatcataatgagtaaaacaaaaaattgatcatagctaccaaa |
559 |
Q |
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| T |
540693 |
agtgcacgtgataaacacaattaatatttatatagtatttcaaattgttttatcacatgatcataatgagtaaaacaaaaaattaatcatagctaccaaa |
540594 |
T |
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| Q |
560 |
ttgtcggacaatggaaaccccca |
582 |
Q |
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| T |
540593 |
ttgtcggacaatggaaaccccca |
540571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 543156 - 543025
Alignment:
| Q |
1 |
attaataactggtaactagtaagtacggctttaacatgttatacagttatgacttttatggtgnnnnnnn-gtttaccaagcaaattgtaagttgtttaa |
99 |
Q |
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| T |
543156 |
attaataactggtaattagtaagtactgctttaacatgtcatacagttatgacttttatggtgttttttttgtttaccaagcaaattgtaagttgtttaa |
543057 |
T |
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| Q |
100 |
cgtgtcgtgcttattcgtgcgtcaggagtgtc |
131 |
Q |
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| T |
543056 |
cgtgtcgtgcttattcgtgcgtcaggagtgtc |
543025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 34432519 - 34432601
Alignment:
| Q |
71 |
gtttaccaagcaaattgtaagttgtttaacgtgtcgtgcttattcgtgcgtcaggagtgtcgtgctatatagcaccactcttt |
153 |
Q |
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| T |
34432519 |
gtttacctagcaaattgtaggttgtttgccgcttcgtgcttattcgtgcatcaagagtgtcgtgctatatagcaccactcttt |
34432601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 542962 - 542919
Alignment:
| Q |
221 |
ctgtagagtaattacttggctcaccagaaattaaacaaccaaaa |
264 |
Q |
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| T |
542962 |
ctgtagagtaattacttggctcaccagaaattaaacaaccaaaa |
542919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 693 - 733
Target Start/End: Complemental strand, 540466 - 540426
Alignment:
| Q |
693 |
aaggtccagctgtggtccttctaatatgacctgttatagct |
733 |
Q |
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| T |
540466 |
aaggtccagctgtggtccttctaatatgacctgttatagct |
540426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 35753492 - 35753571
Alignment:
| Q |
71 |
gtttaccaagcaaattgtaagttgtttaacgtgtcgtgcttattcgtgcgtcaggagtgtcgtgctatatagcaccactc |
150 |
Q |
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| T |
35753492 |
gtttacctaacaaattgtaggctgtttgaagcttcgtgcttattcgtgcatcaagagtgtcgtgctatatagcaccactc |
35753571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 693 - 732
Target Start/End: Complemental strand, 28824022 - 28823983
Alignment:
| Q |
693 |
aaggtccagctgtggtccttctaatatgacctgttatagc |
732 |
Q |
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| T |
28824022 |
aaggtccaactgtggtccttctaatatgacctgttatagc |
28823983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 732
Target Start/End: Complemental strand, 30562390 - 30562351
Alignment:
| Q |
693 |
aaggtccagctgtggtccttctaatatgacctgttatagc |
732 |
Q |
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| T |
30562390 |
aaggtccaactgtggtccttctaatatgacctgatatagc |
30562351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 732
Target Start/End: Complemental strand, 54902183 - 54902144
Alignment:
| Q |
693 |
aaggtccagctgtggtccttctaatatgacctgttatagc |
732 |
Q |
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| T |
54902183 |
aaggtccaactgtggtccttctaatatgacctgatatagc |
54902144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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