View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1756_low_10 (Length: 373)
Name: NF1756_low_10
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1756_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 44142271 - 44141951
Alignment:
| Q |
18 |
atcttttatgatttccagctggattccggacttttatgttttctgcagcttctgtccgaggagcaaaacatgggttttccttcacattcaataggtatac |
117 |
Q |
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| T |
44142271 |
atcttttatgatttccagctggattccggacttttatgttttctgcagcttcagtccgaggagcaaaacatgggttttccttcacattcaataggtatac |
44142172 |
T |
|
| Q |
118 |
tttcctcacttgagaaaaaacatttcttttctctatttgtatttgttcagtaattgagtggaaatgggcgaaagcatggtttgttttcatgagtttattt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142171 |
tttcctcacttgagaaaaaacatttcttttctctatttgtatttgttcaataattgagtggaaatgggcgaaagcatggtttgttttcatgagtttattt |
44142072 |
T |
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| Q |
218 |
gggctatatatctttagggccactactgattcggattcatatcttctcaacttatttctgcaaaatgtaatcccaaagttaaatgtggttatatagtgca |
317 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44142071 |
gggctatatatctttagggctactactgattcggattcatatcttctcaacttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgca |
44141972 |
T |
|
| Q |
318 |
gatcgcattttctcaacaaaa |
338 |
Q |
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|||| ||||||||||| |||| |
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| T |
44141971 |
gatcacattttctcaaaaaaa |
44141951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 169 - 338
Target Start/End: Complemental strand, 50062698 - 50062529
Alignment:
| Q |
169 |
aattgagtggaaatgggcgaaagcatggtttgttttcatgagtttatttgggctatatatctttagggccactactgattcggattcatatcttctcaac |
268 |
Q |
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| T |
50062698 |
aattgagcggaaatgggcgaaagcatattttgttttcatgagtttatttgggctatatatctttagggctactactgattcggattcatatcttctcaac |
50062599 |
T |
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| Q |
269 |
ttatttctgcaaaatgtaatcccaaagttaaatgtggttatatagtgcagatcgcattttctcaacaaaa |
338 |
Q |
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| T |
50062598 |
ttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgtagatcgcattttctcaaaaaaa |
50062529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 50062923 - 50062794
Alignment:
| Q |
18 |
atcttttatgatttccagctggattccggacttttatgttttctgcagcttctgtccgaggagcaaaacatgggttttccttcacattcaataggtatac |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50062923 |
atcttttatgatttccagctggattgcggacttttatgttttctgcagcttcagtccgaggagcaaaacatgggttttccttcacattcaataggtatac |
50062824 |
T |
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| Q |
118 |
tttcctcacttgagaaaaaacatttctttt |
147 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
50062823 |
tttcctcacttgagaaaaaacatttctttt |
50062794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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