View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1756_low_11 (Length: 368)
Name: NF1756_low_11
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1756_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 31852225 - 31851885
Alignment:
| Q |
13 |
aatatatctgtaggtggaacaatgatagaacctgcttcaacatttttcatgtttttgctttctccttttagttcatttgaaacattacctgggaaaatgc |
112 |
Q |
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| T |
31852225 |
aatatatctgtagctggaacaatgacagaacctgcttcaacatttttcatgtttttgctttctccttttagttcatttgaaacattacctgggaaaatgc |
31852126 |
T |
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| Q |
113 |
tgatgcaagtgctgaacgtcgatcacctgatttcttactagcaagaactgccaaagaagtgctaacaaccacttcagcctacaagaaataagtgcttttg |
212 |
Q |
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| T |
31852125 |
tgatgcaagtgctgaacgttgatcacctgatttcttactagcaagaactgccaaagaagtgctaacaaccacttcagcctacaagaaataagtgctttgg |
31852026 |
T |
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| Q |
213 |
aaaaattagtcaatcataataaacaaatgcaaggcacaaaatatatggttaaaaattttaatcctagagaatttcaagttcctgaccttagaggctccaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31852025 |
aaaaattagtcaatcataataaacaaatgcaaggcacaaaatatatggttaaaaattttaatcctagagaatttcaagttcctgaccttagaggctccaa |
31851926 |
T |
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| Q |
313 |
tagccaatcgtttcgcatagtcatcagttgtatgttgtttg |
353 |
Q |
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| T |
31851925 |
tagccaatcgtttcgcatagtcatcagttgtatgttgtttg |
31851885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 31555955 - 31555789
Alignment:
| Q |
13 |
aatatatctgtaggtggaacaatgatagaacctgcttcaacatttttcatgtttttgctttctccttttagttcatttgaaacattacctgggaaaatgc |
112 |
Q |
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| T |
31555955 |
aatatatatgtagcttgaacaatgatccaacctacttctatattattcttgtttatcctttctcctttta-ttcatttgaaacattacctgggcgaatgc |
31555857 |
T |
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| Q |
113 |
tgatgcaagtgctgaacgtcgatcacctgatttcttactagcaagaactgccaaagaagtgctaacaa |
180 |
Q |
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| T |
31555856 |
tgatacaacggctgaacattgatcacttgattacttactagctagacatgccaaataagtgctaacaa |
31555789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 50807385 - 50807485
Alignment:
| Q |
27 |
tggaacaatgatagaacctgcttcaacatttttcatgtttttgctttctccttttagttcatttgaaacattacctgggaaaatgctgatgcaagtgctg |
126 |
Q |
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|||||||| |||| |||||||||| ||| | || ||||||| |||||| |||| |||||||||||||||||||||| ||||||| || ||||||||| |
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| T |
50807385 |
tggaacaaagatacaacctgcttctacaatatttttgttttttctttct---ttta-ttcatttgaaacattacctgggcaaatgctaatccaagtgctg |
50807480 |
T |
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| Q |
127 |
aacgt |
131 |
Q |
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||||| |
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| T |
50807481 |
aacgt |
50807485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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