View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1756_low_12 (Length: 350)

Name: NF1756_low_12
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1756_low_12
NF1756_low_12
[»] chr1 (17 HSPs)
chr1 (13-345)||(15240437-15240771)
chr1 (230-304)||(40132302-40132375)
chr1 (230-298)||(8462420-8462487)
chr1 (230-298)||(39501758-39501825)
chr1 (230-297)||(34967471-34967537)
chr1 (229-304)||(39739448-39739522)
chr1 (266-301)||(52551735-52551770)
chr1 (266-304)||(27952716-27952754)
chr1 (265-310)||(26060627-26060672)
chr1 (249-301)||(8878856-8878907)
chr1 (229-297)||(10656712-10656779)
chr1 (230-298)||(13985408-13985476)
chr1 (230-298)||(16010991-16011058)
chr1 (230-298)||(26541161-26541228)
chr1 (230-298)||(34347346-34347413)
chr1 (232-304)||(41617553-41617624)
chr1 (230-298)||(51560821-51560888)
[»] chr5 (11 HSPs)
chr5 (230-304)||(15268407-15268480)
chr5 (230-301)||(2606557-2606627)
chr5 (202-304)||(5070825-5070927)
chr5 (238-301)||(5288929-5288991)
chr5 (230-301)||(21772784-21772854)
chr5 (230-301)||(22801823-22801893)
chr5 (266-304)||(21486740-21486778)
chr5 (227-301)||(26256371-26256444)
chr5 (235-301)||(30077271-30077336)
chr5 (230-298)||(7363237-7363304)
chr5 (249-301)||(28024656-28024707)
[»] chr4 (14 HSPs)
chr4 (248-304)||(10699338-10699393)
chr4 (248-304)||(10913108-10913163)
chr4 (227-306)||(22493808-22493886)
chr4 (248-303)||(10672774-10672828)
chr4 (248-303)||(10886414-10886468)
chr4 (230-301)||(37390570-37390640)
chr4 (230-297)||(53690313-53690379)
chr4 (266-304)||(19721285-19721323)
chr4 (266-304)||(26855429-26855467)
chr4 (230-298)||(18052787-18052854)
chr4 (249-301)||(29832202-29832253)
chr4 (229-301)||(35876979-35877050)
chr4 (230-298)||(49235898-49235965)
chr4 (230-298)||(56038555-56038622)
[»] chr3 (19 HSPs)
chr3 (230-298)||(48574782-48574849)
chr3 (230-304)||(47915955-47916028)
chr3 (230-304)||(52262299-52262372)
chr3 (230-298)||(23781979-23782046)
chr3 (230-298)||(29343277-29343344)
chr3 (230-301)||(9508641-9508711)
chr3 (230-301)||(9516616-9516686)
chr3 (230-301)||(47241237-47241307)
chr3 (230-304)||(39144540-39144613)
chr3 (271-304)||(3428979-3429012)
chr3 (271-304)||(9151317-9151350)
chr3 (230-298)||(4392471-4392538)
chr3 (249-301)||(23307870-23307921)
chr3 (230-298)||(23609373-23609440)
chr3 (265-301)||(33593088-33593124)
chr3 (265-301)||(33600219-33600255)
chr3 (230-298)||(48584024-48584091)
chr3 (249-301)||(49818372-49818423)
chr3 (230-298)||(52915098-52915165)
[»] chr6 (8 HSPs)
chr6 (238-304)||(290420-290485)
chr6 (266-301)||(14499218-14499253)
chr6 (266-301)||(28075156-28075191)
chr6 (238-304)||(31712649-31712714)
chr6 (230-298)||(1228141-1228208)
chr6 (230-298)||(14304421-14304488)
chr6 (230-298)||(25526792-25526859)
chr6 (249-301)||(29818277-29818328)
[»] chr7 (15 HSPs)
chr7 (229-301)||(30440532-30440603)
chr7 (230-301)||(9603795-9603865)
chr7 (230-301)||(9831366-9831436)
chr7 (230-301)||(24685564-24685634)
chr7 (230-297)||(37277759-37277825)
chr7 (232-298)||(24729633-24729698)
chr7 (266-304)||(42584466-42584504)
chr7 (229-298)||(4513499-4513567)
chr7 (245-297)||(508927-508978)
chr7 (230-301)||(3264419-3264488)
chr7 (230-298)||(24924311-24924378)
chr7 (229-297)||(27059679-27059746)
chr7 (230-298)||(37115807-37115874)
chr7 (230-298)||(44481061-44481128)
chr7 (230-298)||(46373142-46373209)
[»] chr2 (11 HSPs)
chr2 (230-301)||(5443798-5443868)
chr2 (230-297)||(22050608-22050674)
chr2 (230-297)||(29360823-29360889)
chr2 (230-301)||(38150593-38150663)
chr2 (232-304)||(12465626-12465696)
chr2 (230-298)||(1684276-1684343)
chr2 (249-301)||(5005159-5005210)
chr2 (230-298)||(5421508-5421576)
chr2 (229-297)||(8444138-8444205)
chr2 (230-298)||(29843801-29843868)
chr2 (230-298)||(44709973-44710040)
[»] chr8 (8 HSPs)
chr8 (230-304)||(41256334-41256407)
chr8 (230-295)||(9792210-9792274)
chr8 (249-310)||(11530065-11530125)
chr8 (75-156)||(12984413-12984493)
chr8 (230-298)||(23606258-23606325)
chr8 (202-297)||(23897726-23897821)
chr8 (229-304)||(35455478-35455550)
chr8 (202-301)||(37964973-37965072)
[»] scaffold0011 (1 HSPs)
scaffold0011 (230-298)||(63419-63486)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 15240437 - 15240771
Alignment:
Q  13 aactttgggttgaatgaagagaaatggaacaataatatagacaagatcgtgcttacttcctcaaaacattttcagtatttatttactaaaaagtatgttc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15240437 aactttgggttgaatgaagagaaatggaacaataatatagacaagatcgtgcttactttctcaaaacattttcagtatttatttactaaaaagtatgttc 15240536  T
Q  113 attttagattactaaaaaggagattgaaaacttctgtagtaaactactccttttgtcctaaataataattcaattt-nnnnnnnntattattccaaatta 211  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||         |||| ||||||||||    
T  15240537 attttagattactaaaaaggagattgaaaacttatgtagtaaactactccttttgtcctaaataataagtcaatttaaaaaaaaatattgttccaaatta 15240636  T
Q  212 taaatcactttacag-attaatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctttaatgtatat 310  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  15240637 taaatcactttacagtattaatgaaatattaattttattttttctattataccttttaaatatttaatactctatcttcttttaattctttaatgtatat 15240736  T
Q  311 atttctgatgtcatttaatttattaagaataattt 345  Q
    |||||| || ||||||||||||||||| |||||||    
T  15240737 atttctcatatcatttaatttattaaggataattt 15240771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 40132302 - 40132375
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctttaat 304  Q
    ||||||| |||||| || ||||| |||||||| |||| || |||||| |||||||||||||||||||| ||||||    
T  40132302 aatgaaacattaatgttatttttcctattatatcttt-aactatttattactctctcttctttcaattttttaat 40132375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 8462487 - 8462420
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || |||||||||||||| | || || |||||| |||||||||||||||||||||    
T  8462487 aatgaaacattaatgttattttttctattatatcctt-aactatttattactctctcttctttcaattc 8462420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 39501758 - 39501825
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    |||||||||||||| || |||||||||||||| |  |||| |||||| |||||||| ||||||||||||    
T  39501758 aatgaaatattaatgttattttttctattatatc-attaactatttattactctcttttctttcaattc 39501825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 34967537 - 34967471
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaatt 297  Q
    ||||||| |||||| || |||||||||||||| |||| || |||||| ||||||||||| ||||||||    
T  34967537 aatgaaaaattaatgttattttttctattatatcttt-aactatttattactctctcttttttcaatt 34967471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 39739448 - 39739522
Alignment:
Q  229 taatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctttaat 304  Q
    |||||||||||||||  |  ||||||||||||| | || || |||||| ||||||||||| |||||||||||||||    
T  39739448 taatgaaatattaatgctactttttctattatatcctt-aattatttattactctctcttttttcaattctttaat 39739522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 301
Target Start/End: Complemental strand, 52551770 - 52551735
Alignment:
Q  266 ttaaatatttaatactctctcttctttcaattcttt 301  Q
    |||| |||||||||||||||||||||||||||||||    
T  52551770 ttaactatttaatactctctcttctttcaattcttt 52551735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 27952716 - 27952754
Alignment:
Q  266 ttaaatatttaatactctctcttctttcaattctttaat 304  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  27952716 ttaactatttattactctctcttctttcaattctttaat 27952754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 26060672 - 26060627
Alignment:
Q  265 tttaaatatttaatactctctcttctttcaattctttaatgtatat 310  Q
    ||||| |||||| |||| |||||||||||||||||||||| |||||    
T  26060672 tttaactatttattactatctcttctttcaattctttaatttatat 26060627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 8878856 - 8878907
Alignment:
Q  249 tttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||||||||| | || || |||||| ||||||||||||||||||||||||    
T  8878856 tttttctattataacctt-aattatttattactctctcttctttcaattcttt 8878907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 10656779 - 10656712
Alignment:
Q  229 taatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaatt 297  Q
    ||||||||||||||| || ||||| |||||||| |  |||| |||| | ||||||||||||||||||||    
T  10656779 taatgaaatattaatgttatttttcctattatatc-cttaactattaattactctctcttctttcaatt 10656712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 13985476 - 13985408
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || ||||| |||||||| | || |  |||||| |||||||||||||||||||||    
T  13985476 aatgaaacattaatgttatttttcctattatatccttaacttatttattactctctcttctttcaattc 13985408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 16010991 - 16011058
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || ||||| |||||||| | || || |||||| |||||||||||||||||||||    
T  16010991 aatgaaaaattaatgttatttttcctattatatcctt-aactatttattactctctcttctttcaattc 16011058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 26541228 - 26541161
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || ||||| |||||||| | || || |||||| |||||||||||||||||||||    
T  26541228 aatgaaaaattaatgttatttttcctattatatcctt-aactatttattactctctcttctttcaattc 26541161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 34347346 - 34347413
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || ||||| |||||||| | || || |||||| |||||||||||||||||||||    
T  34347346 aatgaaaaattaatattatttttcctattatatcctt-aactatttattactctctcttctttcaattc 34347413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 41617624 - 41617553
Alignment:
Q  232 tgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctttaat 304  Q
    ||||| |||||| ||  |||||||||||||| |||||| |||||| |||| | | ||||||||||||||||||    
T  41617624 tgaaacattaatgttactttttctattatac-ttttaactatttattactattttttctttcaattctttaat 41617553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 51560821 - 51560888
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || |||||||||||||| | || || |||||| | |||||||||||||||||||    
T  51560821 aatgaaaaattaatattattttttctattatatcctt-aactatttattgctctctcttctttcaattc 51560888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 15268480 - 15268407
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctttaat 304  Q
    ||||||| |||||| ||||||||||||||||| | || || |||||| |||||||||||||||||||||||||||    
T  15268480 aatgaaacattaatgttgttttttctattatatcctt-aattatttattactctctcttctttcaattctttaat 15268407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 2606627 - 2606557
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||| |||||| || ||||| |||||||| | || || |||||| ||||||||||||||||||||||||    
T  2606627 aatgaaaaattaatgttatttttcctattatatcctt-aactatttattactctctcttctttcaattcttt 2606557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 304
Target Start/End: Original strand, 5070825 - 5070927
Alignment:
Q  202 ttccaaattataaatcactttacag-attaatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctt 300  Q
    ||||||||||||  || |||||||  || |||||||||||||| || ||||| |||||||| | || || |||| | |||||||||||||||||||| ||    
T  5070825 ttccaaattatatgtcgctttacaatatcaatgaaatattaatgttatttttcctattatatcctt-aactattaattactctctcttctttcaattatt 5070923  T
Q  301 taat 304  Q
    ||||    
T  5070924 taat 5070927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 5288929 - 5288991
Alignment:
Q  238 attaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    |||||| || ||||||||||||||  |||||| |||||| |||| |||||||||||||||||||    
T  5288929 attaatgttattttttctattataa-ttttaattatttattactatctcttctttcaattcttt 5288991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 21772854 - 21772784
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||| |||||| || ||||| |||||||| |||| || |||||| |||||| |||||||||||||||||    
T  21772854 aatgaaacattaatgttatttttcctattatatcttt-aactatttattactctttcttctttcaattcttt 21772784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 22801893 - 22801823
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    |||||||||||||| ||  ||||||||||||| |||| || |||||| |||| | |||||||||||||||||    
T  22801893 aatgaaatattaatgttactttttctattatatcttt-aactatttattactttttcttctttcaattcttt 22801823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 21486740 - 21486778
Alignment:
Q  266 ttaaatatttaatactctctcttctttcaattctttaat 304  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  21486740 ttaactatttattactctctcttctttcaattctttaat 21486778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 26256371 - 26256444
Alignment:
Q  227 attaatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||| || |||||| || ||||| |||||||| | || || |||||| ||||||||||||||||||||||||    
T  26256371 attaatgcaacattaatgttatttttcctattataacctt-aactatttattactctctcttctttcaattcttt 26256444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 30077336 - 30077271
Alignment:
Q  235 aatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||||| |||||||| |||||||| |  | || |||||| ||||||||||||||||||||||||    
T  30077336 aatattaatgttgtttttcctattataaccct-aactatttattactctctcttctttcaattcttt 30077271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 7363304 - 7363237
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    |||||||  ||||| || ||||| |||||||| |||| || |||||| |||||||||||||||||||||    
T  7363304 aatgaaaatttaatgttatttttcctattatatcttt-aactatttattactctctcttctttcaattc 7363237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 28024656 - 28024707
Alignment:
Q  249 tttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||||||||| |||| || |||||| |||||| |||||||||||||||||    
T  28024656 tttttctattataacttt-aattatttattactctatcttctttcaattcttt 28024707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 10699393 - 10699338
Alignment:
Q  248 ttttttctattataccttttaaatatttaatactctctcttctttcaattctttaat 304  Q
    |||||||||||||||| || || |||||| |||||||||||||||||||||||||||    
T  10699393 ttttttctattataccatt-aattatttattactctctcttctttcaattctttaat 10699338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 10913163 - 10913108
Alignment:
Q  248 ttttttctattataccttttaaatatttaatactctctcttctttcaattctttaat 304  Q
    |||||||||||||||| || || |||||| |||||||||||||||||||||||||||    
T  10913163 ttttttctattataccatt-aattatttattactctctcttctttcaattctttaat 10913108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 22493886 - 22493808
Alignment:
Q  227 attaatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctttaatgt 306  Q
    |||||||||||||||||||    ||||||||||||| | |||| |||||| |||| ||||| ||||||||||||||||||    
T  22493886 attaatgaaatattaatttcaccttttctattatac-tcttaactatttattactttctctactttcaattctttaatgt 22493808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 10672774 - 10672828
Alignment:
Q  248 ttttttctattataccttttaaatatttaatactctctcttctttcaattctttaa 303  Q
    |||||||||||||||| || || |||||| || |||||||||||||||||||||||    
T  10672774 ttttttctattataccatt-aattatttattattctctcttctttcaattctttaa 10672828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 10886414 - 10886468
Alignment:
Q  248 ttttttctattataccttttaaatatttaatactctctcttctttcaattctttaa 303  Q
    |||||||||||||||| || || |||||| || |||||||||||||||||||||||    
T  10886414 ttttttctattataccatt-aattatttattattctctcttctttcaattctttaa 10886468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 37390570 - 37390640
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||| |||||| || |||||||||||||| | || || |||||| |||||| |||||||||||||||||    
T  37390570 aatgaaacattaatgttattttttctattatatcctt-aactatttattactctttcttctttcaattcttt 37390640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 53690313 - 53690379
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaatt 297  Q
    |||||||||||||| || ||||| |||||||| | ||||| |||| | ||||||||||||||||||||    
T  53690313 aatgaaatattaatgttatttttcctattatatc-tttaactattaattactctctcttctttcaatt 53690379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 19721323 - 19721285
Alignment:
Q  266 ttaaatatttaatactctctcttctttcaattctttaat 304  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  19721323 ttaactatttattactctctcttctttcaattctttaat 19721285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 26855429 - 26855467
Alignment:
Q  266 ttaaatatttaatactctctcttctttcaattctttaat 304  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  26855429 ttaactatttattactctctcttctttcaattctttaat 26855467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 18052787 - 18052854
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || ||||| |||||||| | || || |||||| |||||||||||||||||||||    
T  18052787 aatgaaaaattaatgttatttttcctattatatcctt-aactatttattactctctcttctttcaattc 18052854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 29832253 - 29832202
Alignment:
Q  249 tttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||||||||| | || || |||||| ||||||||||||||||||||||||    
T  29832253 tttttctattataacctt-aattatttattactctctcttctttcaattcttt 29832202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 35877050 - 35876979
Alignment:
Q  229 taatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    |||||||| |||||| || |||||||||||||| |  |||| |||||| |||||| |||| ||||||||||||    
T  35877050 taatgaaacattaatgttattttttctattatatc-cttaactatttattactctttcttgtttcaattcttt 35876979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 49235965 - 49235898
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || ||||| |||||||| | || || |||||| |||||||||||||||||||||    
T  49235965 aatgaaaaattaatgttatttttcctattatatcctt-aactatttattactctctcttctttcaattc 49235898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 56038622 - 56038555
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || ||||| |||||||| | || || |||||| |||||||||||||||||||||    
T  56038622 aatgaaaaattaatgttatttttcctattatatcctt-aactatttattactctctcttctttcaattc 56038555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 48574849 - 48574782
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || |||||||||||||| |||| || |||||| |||||||||||||||||||||    
T  48574849 aatgaaaaattaatattattttttctattatatcttt-aactatttattactctctcttctttcaattc 48574782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 47916028 - 47915955
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctttaat 304  Q
    |||||||||||||| || |||||||||||||| |  |||| |||||| |||||||| ||||||||||| ||||||    
T  47916028 aatgaaatattaatgttattttttctattatatc-cttaactatttattactctcttttctttcaattatttaat 47915955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 52262299 - 52262372
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctttaat 304  Q
    ||||||| |||||| ||  ||||||||||||||| || || |||||| ||||||||||||||||| |||||||||    
T  52262299 aatgaaacattaatgttactttttctattataccctt-aactatttattactctctcttctttcatttctttaat 52262372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 23781979 - 23782046
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| ||||||||| ||||| |||||||| |||| || |||||| |||||| ||||||||||||||    
T  23781979 aatgaaaaattaattttatttttcctattatatcttt-aactatttattactctatcttctttcaattc 23782046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 29343277 - 29343344
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || ||||| |||||||| |||| || |||||| |||||||||||||||||||||    
T  29343277 aatgaaaaattaatgttatttttcctattatatcttt-aactatttattactctctcttctttcaattc 29343344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 9508711 - 9508641
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    |||| ||||||||| ||  |||||||||||||  | |||| |||||| ||||||||||||||||||||||||    
T  9508711 aatgtaatattaatgttactttttctattatat-tcttaactatttattactctctcttctttcaattcttt 9508641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 9516686 - 9516616
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    |||| ||||||||| ||  |||||||||||||  | |||| |||||| ||||||||||||||||||||||||    
T  9516686 aatgtaatattaatgttactttttctattatat-tcttaactatttattactctctcttctttcaattcttt 9516616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 47241237 - 47241307
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||| |||||| || ||||| |||||||| |||| || |||||| |||||| |||||||||||||||||    
T  47241237 aatgaaacattaatgttatttttcctattatatcttt-aactatttattactctttcttctttcaattcttt 47241307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 39144613 - 39144540
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctttaat 304  Q
    ||||||| |||||| || ||||| |||||||| | || || |||||| ||||||||||| |||||||||||||||    
T  39144613 aatgaaacattaatgttatttttcctattatatcatt-aactatttattactctctcttatttcaattctttaat 39144540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 3429012 - 3428979
Alignment:
Q  271 tatttaatactctctcttctttcaattctttaat 304  Q
    |||||| |||||||||||||||||||||||||||    
T  3429012 tatttattactctctcttctttcaattctttaat 3428979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 9151350 - 9151317
Alignment:
Q  271 tatttaatactctctcttctttcaattctttaat 304  Q
    |||||| |||||||||||||||||||||||||||    
T  9151350 tatttattactctctcttctttcaattctttaat 9151317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 4392538 - 4392471
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || ||||| |||||||| | || || |||||| |||||||||||||||||||||    
T  4392538 aatgaaaaattaatgttatttttcctattatatcctt-aactatttattactctctcttctttcaattc 4392471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 23307870 - 23307921
Alignment:
Q  249 tttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||||||||| |||| || |||||| | ||||||||||||||||||||||    
T  23307870 tttttctattataacttt-aactatttattgctctctcttctttcaattcttt 23307921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 23609440 - 23609373
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| ||  |||| |||||||| |||| || |||||| |||||||||||||||||||||    
T  23609440 aatgaaaaattaatgttacttttcctattatatcttt-aactatttattactctctcttctttcaattc 23609373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 33593124 - 33593088
Alignment:
Q  265 tttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  33593124 tttaattatttattactctctcttctttcaattcttt 33593088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 33600255 - 33600219
Alignment:
Q  265 tttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  33600255 tttaattatttattactctctcttctttcaattcttt 33600219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 48584091 - 48584024
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    |||||||||||||| ||  |||| |||||||| | || || |||||| |||||||||||||||||||||    
T  48584091 aatgaaatattaatgttacttttcctattatatcctt-aactatttattactctctcttctttcaattc 48584024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 49818372 - 49818423
Alignment:
Q  249 tttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||||||||| | || || |||||| ||||||||||||||||||||||||    
T  49818372 tttttctattataacctt-aattatttattactctctcttctttcaattcttt 49818423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 52915098 - 52915165
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || ||||| |||||||| | || || |||||| |||||||||||||||||||||    
T  52915098 aatgaaaaattaatgttatttttcctattatatcctt-aactatttattactctctcttctttcaattc 52915165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 290420 - 290485
Alignment:
Q  238 attaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctttaat 304  Q
    ||||||||| |||||| ||||||| |||| || |||||| |||||||||||||||||| ||||||||    
T  290420 attaattttattttttatattatatcttt-aactatttattactctctcttctttcaactctttaat 290485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 301
Target Start/End: Original strand, 14499218 - 14499253
Alignment:
Q  266 ttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14499218 ttaaatatttattactctctcttctttcaattcttt 14499253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 301
Target Start/End: Complemental strand, 28075191 - 28075156
Alignment:
Q  266 ttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||||||| ||||||||||||||||||||||||    
T  28075191 ttaaatatttattactctctcttctttcaattcttt 28075156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 31712714 - 31712649
Alignment:
Q  238 attaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctttaat 304  Q
    |||||||||  ||||||| |||||| |||||  |||||| |||||| ||||||||||||||||||||    
T  31712714 attaattttactttttctcttatac-ttttagctatttattactctatcttctttcaattctttaat 31712649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 1228208 - 1228141
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| ||  ||||||||||||| |||| || |||||| |||| ||||||||||||||||    
T  1228208 aatgaaaaattaatgttactttttctattatatcttt-aactatttattactatctcttctttcaattc 1228141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 14304421 - 14304488
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| ||  ||||||||||||| | || || |||||| |||||||||||||||||||||    
T  14304421 aatgaaaaattaatgttactttttctattatatcctt-aattatttattactctctcttctttcaattc 14304488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 25526859 - 25526792
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || ||||| |||||||| | || || |||||| |||||||||||||||||||||    
T  25526859 aatgaaaaattaatgttatttttcctattatatcctt-aactatttattactctctcttctttcaattc 25526792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 29818277 - 29818328
Alignment:
Q  249 tttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||||||||| | || || |||||| ||||||||||||||||||||||||    
T  29818277 tttttctattataacctt-aattatttattactctctcttctttcaattcttt 29818328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 30440603 - 30440532
Alignment:
Q  229 taatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||| ||||||||| || |||||||| ||||||| || || |||||| || |||||||||||||||||||||    
T  30440603 taatgcaatattaatgttattttttcttttataccatt-aactatttattattctctcttctttcaattcttt 30440532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 9603865 - 9603795
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||| |||||||||  ||||| ||||||| |||| || |||||| |||||| |||||||||||||||||    
T  9603865 aatgaaacattaattttactttttttattatatcttt-aactatttattactctttcttctttcaattcttt 9603795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 9831436 - 9831366
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||| |||||||||  ||||| ||||||| |||| || |||||| |||||| |||||||||||||||||    
T  9831436 aatgaaacattaattttactttttttattatatcttt-aactatttattactctttcttctttcaattcttt 9831366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 24685634 - 24685564
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||| |||||| || ||||| |||||||| |||| || |||||| |||||| |||||||||||||||||    
T  24685634 aatgaaacattaatgttatttttcctattatatcttt-aactatttattactctttcttctttcaattcttt 24685564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 37277759 - 37277825
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaatt 297  Q
    |||||||||||||| || ||||| |||||||| | ||||| |||| | ||||||||||||||||||||    
T  37277759 aatgaaatattaatgttatttttcctattatatc-tttaactattaattactctctcttctttcaatt 37277825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 24729698 - 24729633
Alignment:
Q  232 tgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    |||||||||||| ||  |||| |||||||| |||| || |||||| |||||||||||||||||||||    
T  24729698 tgaaatattaatgttacttttcctattatatcttt-aactatttattactctctcttctttcaattc 24729633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 42584504 - 42584466
Alignment:
Q  266 ttaaatatttaatactctctcttctttcaattctttaat 304  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  42584504 ttaactatttattactctctcttctttcaattctttaat 42584466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 4513567 - 4513499
Alignment:
Q  229 taatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    |||||||| |||||| || ||||| |||||||| | || || |||||| |||||||||||||||||||||    
T  4513567 taatgaaaaattaatgttatttttcctattatatcctt-aactatttattactctctcttctttcaattc 4513499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 508978 - 508927
Alignment:
Q  245 ttgttttttctattataccttttaaatatttaatactctctcttctttcaatt 297  Q
    ||||||||||||||||| |||| || |||||| ||||||||||||||| ||||    
T  508978 ttgttttttctattatatcttt-aactatttattactctctcttcttttaatt 508927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 3264419 - 3264488
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||| |||||| || ||||||||||||||  | |||| |||||| |||||| |||| ||||||||||||    
T  3264419 aatgaaacattaatgttattttttctattata--tcttaactatttattactctttcttttttcaattcttt 3264488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 24924378 - 24924311
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || |||||||||||||| | || || |||||| |||| ||||||||||||||||    
T  24924378 aatgaaaaattaatgttattttttctattatatcctt-aactatttattactttctcttctttcaattc 24924311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 27059746 - 27059679
Alignment:
Q  229 taatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaatt 297  Q
    ||||||||||||||| || ||||| |||||||| |  |||| |||| | ||||||||||||||||||||    
T  27059746 taatgaaatattaatgttatttttcctattatatc-attaactattaattactctctcttctttcaatt 27059679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 37115807 - 37115874
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| ||  ||||||||||||| | || || |||||| |||||||||||||||||||||    
T  37115807 aatgaaaaattaatgttactttttctattatatcctt-aactatttattactctctcttctttcaattc 37115874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 44481061 - 44481128
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| ||  ||||||||||||| | || || |||||| |||||||||||||||||||||    
T  44481061 aatgaaaaattaatgttactttttctattatatcctt-aactatttattactctctcttctttcaattc 44481128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 46373209 - 46373142
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| ||  ||||||||||||| | || || |||||| |||||||||||||||||||||    
T  46373209 aatgaaaaattaatgttactttttctattatatcctt-aactatttattactctctcttctttcaattc 46373142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 5443868 - 5443798
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    |||| ||||||||| || |||||||||||||| |||| || |||||| |||| ||| |||||||||||||||    
T  5443868 aatgtaatattaatgttattttttctattatatcttt-aactatttattactatctattctttcaattcttt 5443798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 22050674 - 22050608
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaatt 297  Q
    |||||||||||||| || |||||||||||||| |  |||| |||| | ||||||||||||||||||||    
T  22050674 aatgaaatattaatgttattttttctattatatc-cttaactattaattactctctcttctttcaatt 22050608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 29360823 - 29360889
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaatt 297  Q
    ||||||| |||||||||  ||||||||||||| | ||||| |||||| |||||||| |||||||||||    
T  29360823 aatgaaacattaattttactttttctattatatc-tttaactatttattactctctattctttcaatt 29360889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 38150593 - 38150663
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||| |||||| ||  ||||||||||||| | || || |||||| ||||||||||||||||||||||||    
T  38150593 aatgaaaaattaatgttactttttctattatatcctt-aactatttattactctctcttctttcaattcttt 38150663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 12465626 - 12465696
Alignment:
Q  232 tgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctttaat 304  Q
    ||||| |||||| || |||||| ||||||| ||||  |||||||| ||||||||| | |||||||||||||||    
T  12465626 tgaaacattaatatttttttttttattatatcttt--aatatttattactctctcgtttttcaattctttaat 12465696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 1684343 - 1684276
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| ||  ||||||||||||| |||| || |||||| |||||| ||||||||||||||    
T  1684343 aatgaaacattaatgttactttttctattatatcttt-aattatttattactctttcttctttcaattc 1684276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 5005210 - 5005159
Alignment:
Q  249 tttttctattataccttttaaatatttaatactctctcttctttcaattcttt 301  Q
    ||||||||||||| | || || |||||| ||||||||||||||||||||||||    
T  5005210 tttttctattataacctt-aattatttattactctctcttctttcaattcttt 5005159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 5421508 - 5421576
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    |||||||||||||| ||  |||| ||||||||  | |||| |||||| |||||||||| ||||||||||    
T  5421508 aatgaaatattaatgttacttttcctattatatttcttaactatttattactctctctcctttcaattc 5421576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 8444205 - 8444138
Alignment:
Q  229 taatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaatt 297  Q
    ||||||||||||||| ||  ||||||||||||| |  |||| |||| | ||||||||||||||||||||    
T  8444205 taatgaaatattaatgttactttttctattatatc-cttaactattaattactctctcttctttcaatt 8444138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 29843868 - 29843801
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    |||||||||||||| || ||||| |||||||| | || || |||||| |||||| ||||||||||||||    
T  29843868 aatgaaatattaatgttatttttcctattatatcctt-aattatttattactctttcttctttcaattc 29843801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 44710040 - 44709973
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    |||||||||||||| || |||||||||||||| |  | || |||||| |||| ||||||||||||||||    
T  44710040 aatgaaatattaatgttattttttctattatatc-ctcaactatttattactttctcttctttcaattc 44709973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 41256407 - 41256334
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctttaat 304  Q
    |||||||||||||| || ||||| |||||||| | || || |||| | |||||||||||||||||||| ||||||    
T  41256407 aatgaaatattaatgttatttttcctattatatcctt-aactattaattactctctcttctttcaattatttaat 41256334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 9792274 - 9792210
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaa 295  Q
    |||||||||||||| ||  ||||||||||||| | || ||||||||| |||||| |||||||||||    
T  9792274 aatgaaatattaatattactttttctattatatcctt-aaatatttattactctatcttctttcaa 9792210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 11530065 - 11530125
Alignment:
Q  249 tttttctattataccttttaaatatttaatactctctcttctttcaattctttaatgtatat 310  Q
    ||||||||||||| |||| || |||||| ||| ||||||| ||||||||||||||| |||||    
T  11530065 tttttctattatatcttt-aattatttattaccctctcttgtttcaattctttaatttatat 11530125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 12984413 - 12984493
Alignment:
Q  75 aaaacattttcagtatttatttactaaaaagtatgttcattttagattactaaaaaggagattgaaaacttctgtagtaaac 156  Q
    |||||||||||||| |  |||| ||||||  | |||||| |||| |||||||| |||||||||||| |||| ||||||||||    
T  12984413 aaaacattttcagtttcaattt-ctaaaatttgtgttcagtttaaattactaacaaggagattgaagacttatgtagtaaac 12984493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 23606258 - 23606325
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| ||  ||||||||||||| | || || |||||| |||||||||||||||||||||    
T  23606258 aatgaaaaattaatgttactttttctattatatcctt-aactatttattactctctcttctttcaattc 23606325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 297
Target Start/End: Original strand, 23897726 - 23897821
Alignment:
Q  202 ttccaaattataaatcactttacag-attaatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaatt 297  Q
    ||||||||||||  ||||||||||  |  |||||||||||||| || ||||| |||||||| |  |||| |||| | ||||||||||||||||||||    
T  23897726 ttccaaattatatgtcactttacaataccaatgaaatattaatgttatttttcctattatatc-cttaactattaattactctctcttctttcaatt 23897821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 35455478 - 35455550
Alignment:
Q  229 taatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctttaat 304  Q
    |||||||| |||||| || |||||||||||||| | ||||| |||||| ||  ||||||||||| |||||||||||    
T  35455478 taatgaaacattaatgttattttttctattatatc-tttaactatttatta--ctctcttcttttaattctttaat 35455550  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 301
Target Start/End: Complemental strand, 37965072 - 37964973
Alignment:
Q  202 ttccaaattataaatcactttacag-attaatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattctt 300  Q
    ||||||||| || |||||||||||  | |||||||| |||||| ||  ||||||||||||| | || || |||||| |||| | ||||||||||||||||    
T  37965072 ttccaaattgtatatcactttacaatactaatgaaacattaatgttactttttctattatatcctt-aactatttattactttttcttctttcaattctt 37964974  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 63419 - 63486
Alignment:
Q  230 aatgaaatattaattttgttttttctattataccttttaaatatttaatactctctcttctttcaattc 298  Q
    ||||||| |||||| || ||||| |||||||| | || || |||||| |||||||||||||||||||||    
T  63419 aatgaaaaattaatgttatttttcctattatatcctt-aactatttattactctctcttctttcaattc 63486  T

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