View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1756_low_13 (Length: 335)
Name: NF1756_low_13
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1756_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 39158534 - 39158227
Alignment:
| Q |
17 |
gttaccacccttgctatttaattttttggtgacaataatctgttaaccattagaattttcatttttctatcctctgtcattgttgtggnnnnnnnnntta |
116 |
Q |
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| T |
39158534 |
gttaccacccttgctatttaattttttggtgacaataatctgttaaccattagaattttcatttttctatcctctgtcattgttgtggaaaaaaaaatta |
39158435 |
T |
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| Q |
117 |
aaatacatataatataattaaaatacgtgttttctgtttgatgagctatgataagtatatgttttcaactgtagggttcgattccactatggtcatccgg |
216 |
Q |
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| T |
39158434 |
aaatacatataatataattaaaatacgtgttttctgtttgatgagctatgataagtatatgttttcaactgtagggttcgattccactatggtcatccgg |
39158335 |
T |
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| Q |
217 |
atgtttttgatagaattttccatgtaacccgcggaggaatcagcaaggcttctcgtggcatcaatctgagcgaggatatatttgctggtaatattcttga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39158334 |
atgtttttgatagaattttccatgtaacccgcggaggaatcagcaaggcttctcgtggcatcaatctgagcgaggatatatttgctggtaatattcttga |
39158235 |
T |
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| Q |
317 |
tacatatt |
324 |
Q |
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|||||||| |
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| T |
39158234 |
tacatatt |
39158227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 188 - 325
Target Start/End: Complemental strand, 43956120 - 43955983
Alignment:
| Q |
188 |
tagggttcgattccactatggtcatccggatgtttttgatagaattttccatgtaacccgcggaggaatcagcaaggcttctcgtggcatcaatctgagc |
287 |
Q |
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| T |
43956120 |
tagggtacgatttcactatggtcatccagatgtttttgatagaattttccacattacccgtggaggaattagtaaggcttctcgtggcatccatttgagc |
43956021 |
T |
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| Q |
288 |
gaggatatatttgctggtaatattcttgatacatattc |
325 |
Q |
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| T |
43956020 |
gaggatatttttgccggtaacattcttgaaacatattc |
43955983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 295
Target Start/End: Original strand, 52674234 - 52674325
Alignment:
| Q |
204 |
tatggtcatccggatgtttttgatagaattttccatgtaacccgcggaggaatcagcaaggcttctcgtggcatcaatctgagcgaggatat |
295 |
Q |
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| T |
52674234 |
tatggtcatcctgatgtttttgatagagtcttccacataacccgcggtggtatcagcaaggcttcccgtgttatcaatattagcgaagatat |
52674325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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