View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1756_low_14 (Length: 311)

Name: NF1756_low_14
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1756_low_14
NF1756_low_14
[»] chr1 (14 HSPs)
chr1 (1-296)||(3265695-3265990)
chr1 (3-43)||(36371494-36371534)
chr1 (1-43)||(4566572-4566614)
chr1 (1-43)||(27567132-27567174)
chr1 (1-43)||(33700783-33700825)
chr1 (1-43)||(2219996-2220038)
chr1 (1-43)||(9165205-9165247)
chr1 (1-43)||(10526847-10526889)
chr1 (1-43)||(15786330-15786372)
chr1 (1-43)||(17745266-17745308)
chr1 (3-43)||(11063580-11063620)
chr1 (3-43)||(31794276-31794316)
chr1 (3-43)||(35562749-35562789)
chr1 (1-29)||(51814532-51814560)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-43)||(94981-95023)
[»] chr8 (16 HSPs)
chr8 (1-43)||(19703497-19703539)
chr8 (1-43)||(2203516-2203558)
chr8 (1-43)||(33017238-33017280)
chr8 (4-43)||(33823084-33823123)
chr8 (1-43)||(968386-968428)
chr8 (1-43)||(3624604-3624646)
chr8 (1-43)||(5264568-5264610)
chr8 (1-43)||(6536544-6536586)
chr8 (1-43)||(8794355-8794397)
chr8 (1-43)||(12281518-12281560)
chr8 (5-43)||(12988452-12988490)
chr8 (1-43)||(16852364-16852406)
chr8 (1-43)||(28783084-28783126)
chr8 (1-42)||(44780124-44780165)
chr8 (1-41)||(18897192-18897232)
chr8 (1-41)||(26688891-26688931)
[»] chr2 (13 HSPs)
chr2 (1-43)||(37480099-37480141)
chr2 (1-43)||(42327405-42327447)
chr2 (8-43)||(42922438-42922473)
chr2 (1-43)||(4262312-4262354)
chr2 (1-43)||(11062384-11062426)
chr2 (1-43)||(19244133-19244175)
chr2 (1-39)||(21195686-21195724)
chr2 (1-43)||(29503295-29503337)
chr2 (2-43)||(12086140-12086181)
chr2 (11-43)||(24191862-24191894)
chr2 (1-41)||(30359680-30359720)
chr2 (1-29)||(34041598-34041626)
chr2 (3-43)||(42602578-42602618)
[»] chr5 (8 HSPs)
chr5 (1-42)||(14285186-14285227)
chr5 (3-43)||(34984830-34984870)
chr5 (1-43)||(25627081-25627123)
chr5 (1-43)||(30883208-30883250)
chr5 (1-43)||(87433-87475)
chr5 (1-43)||(892484-892526)
chr5 (1-43)||(16457834-16457876)
chr5 (3-43)||(7918481-7918521)
[»] chr4 (16 HSPs)
chr4 (1-41)||(47202433-47202473)
chr4 (1-44)||(23377979-23378022)
chr4 (1-43)||(7292808-7292850)
chr4 (1-43)||(16581717-16581759)
chr4 (1-43)||(37109361-37109403)
chr4 (5-45)||(5450115-5450155)
chr4 (3-42)||(37274471-37274510)
chr4 (8-43)||(41683773-41683808)
chr4 (1-43)||(1730499-1730541)
chr4 (1-43)||(7949464-7949506)
chr4 (1-43)||(31759668-31759710)
chr4 (1-43)||(38869792-38869834)
chr4 (1-43)||(46545735-46545777)
chr4 (3-43)||(11592165-11592205)
chr4 (1-41)||(32992638-32992678)
chr4 (4-44)||(37720227-37720267)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-43)||(19972-20014)
[»] chr7 (16 HSPs)
chr7 (1-43)||(3280495-3280537)
chr7 (1-43)||(14058277-14058319)
chr7 (1-43)||(14368305-14368347)
chr7 (1-43)||(26459420-26459462)
chr7 (1-43)||(2962483-2962525)
chr7 (3-41)||(5273602-5273640)
chr7 (1-43)||(17113819-17113861)
chr7 (1-43)||(21558152-21558194)
chr7 (1-43)||(22760887-22760929)
chr7 (1-43)||(23552142-23552184)
chr7 (1-43)||(25021345-25021387)
chr7 (3-41)||(38374611-38374649)
chr7 (1-43)||(43215208-43215250)
chr7 (1-41)||(5579244-5579284)
chr7 (3-43)||(19553478-19553517)
chr7 (3-43)||(30442512-30442552)
[»] chr3 (8 HSPs)
chr3 (1-43)||(16354902-16354944)
chr3 (1-43)||(21960575-21960617)
chr3 (1-43)||(27093371-27093413)
chr3 (1-43)||(53412969-53413011)
chr3 (1-43)||(32651448-32651490)
chr3 (1-43)||(37788475-37788517)
chr3 (1-42)||(10445149-10445190)
chr3 (8-40)||(26481954-26481986)
[»] scaffold0258 (1 HSPs)
scaffold0258 (1-43)||(15333-15375)
[»] chr6 (6 HSPs)
chr6 (1-43)||(10338184-10338226)
chr6 (5-43)||(12188317-12188355)
chr6 (1-43)||(31623001-31623043)
chr6 (1-43)||(31847095-31847137)
chr6 (1-43)||(33549128-33549170)
chr6 (1-37)||(23910121-23910157)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 3265990 - 3265695
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaataattcttgtaatgatctaatcttcactaagaggattacctatgaggagcatctggtgg 100  Q
    ||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3265990 tgagaccttgaggaggagcacactcccaagttccaagtcaataattcttgtaatgatctaatcttcactaagaggattacatatgaggagcatctggtgg 3265891  T
Q  101 atgtggtaaaattcttgctcttacgagtgggaggtggaacccgtcatgtgcaagggtagagttttggggtgttggcggagtcaggttgttgtgctttagg 200  Q
    ||||||||||||| ||||||||||||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||    
T  3265890 atgtggtaaaatttttgctcttacgagtggggggtggaacccaccatgtgcaaaggtagagttttggggtgttggcggagtcgggttgctgtgctttagg 3265791  T
Q  201 atgcttggtgggacgctttcgattatcctcttaggaatagttatgtgatgtcttctctctgttagccgacatggatgcatgttggaatgttggagc 296  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3265790 atgcttggtgggacgctttcgattctcctcttaggaatagttatgtgatgtcttctctctgttagccgacatggatgcatgttggaatgttggagc 3265695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 36371534 - 36371494
Alignment:
Q  3 agaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  36371534 agaccttgaggaggagcacactcccaggttccaagccaata 36371494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4566614 - 4566572
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||| ||||||||||||||||| |||||||||||||||||    
T  4566614 tgagaccctgaggaggagcacactcccaggttccaagccaata 4566572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27567132 - 27567174
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  27567132 tgagaccttgaagaggagcacactctcaggttccaagtcaata 27567174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33700783 - 33700825
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  33700783 tgagaccttgaggaggagcacactcccagattccaagccaata 33700825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2220038 - 2219996
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||| |||||| |||||||| ||||||||||||||||||    
T  2220038 tgagacctcgaggagaagcacactttcaggttccaagccaata 2219996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9165205 - 9165247
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||| |||||||||||||||||| ||||| |||||||||||    
T  9165205 tgagactttgaggaggagcacactcccaggtcccaagccaata 9165247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10526889 - 10526847
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||||||||| |||| ||||| |||||||||||    
T  10526889 tgagaccttgaggaggagcaaactcccaggtcccaagccaata 10526847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15786330 - 15786372
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| ||| | |||||||||||    
T  15786330 tgagaccttgaggaggagcacactcccagatcccaagccaata 15786372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17745266 - 17745308
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||| |||||||||||||| ||||||| |||||||||||    
T  17745266 tgagacctcgaggaggagcacacgctcaggtcccaagccaata 17745308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 11063620 - 11063580
Alignment:
Q  3 agaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||| |||||| |||||| |||||||||||    
T  11063620 agaccttgaggaggaacacactttcaggtcccaagccaata 11063580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 31794276 - 31794316
Alignment:
Q  3 agaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||| || || |||||||||||    
T  31794276 agaccttgaggaggagcacactcccaagtcccaagccaata 31794316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 35562789 - 35562749
Alignment:
Q  3 agaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||| ||||||||||||| |||||||| |||||||||||    
T  35562789 agacctcgaggaggagcacattctcaggtcccaagccaata 35562749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 51814560 - 51814532
Alignment:
Q  1 tgagaccttgaggaggagcacactctcag 29  Q
    |||||||||||||||||||||||||||||    
T  51814560 tgagaccttgaggaggagcacactctcag 51814532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 94981 - 95023
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  94981 tgagaccttgaggaggagcacactcccaggttccaagccaata 95023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 19703497 - 19703539
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  19703497 tgagaccttgaggaggagcacactctcaggtcccaagccaata 19703539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2203558 - 2203516
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  2203558 tgagaccttgaggaggagcacactcccaggtcccaagccaata 2203516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33017280 - 33017238
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  33017280 tgagaccttgaggaggagcacacttccaggttccaagccaata 33017238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 33823084 - 33823123
Alignment:
Q  4 gaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  33823084 gaccttgaggaggagcacactctcaggtctcaagccaata 33823123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 968428 - 968386
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||| |||||||||||||||| ||||| |||||||||||    
T  968428 tgagacctcgaggaggagcacactcccaggtcccaagccaata 968386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3624646 - 3624604
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||    
T  3624646 tgagaccttgaagaggagcacactcccaggtcccaagccaata 3624604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5264610 - 5264568
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||| ||||||||||||| || |||||||||||||||||    
T  5264610 tgagacctcgaggaggagcacattcccaggttccaagccaata 5264568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 6536586 - 6536544
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||||||||||||||  |||| |||||||||||    
T  6536586 tgagaccttgaggaggagcacactcctaggtcccaagccaata 6536544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 8794355 - 8794397
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||| ||||||||||||||||  |||||||||||||||||    
T  8794355 tgagaccctgaggaggagcacacttccaggttccaagccaata 8794397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 12281560 - 12281518
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||| ||||||| |||||||||||||| |||||||||||    
T  12281560 tgagacctcgaggaggggcacactctcaggtcccaagccaata 12281518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 12988490 - 12988452
Alignment:
Q  5 accttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  12988490 accttgaggaggagcacacttccaggttccaagccaata 12988452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16852406 - 16852364
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||| |||||||||||||||| ||||| |||||||||||    
T  16852406 tgagacctcgaggaggagcacactcccaggtcccaagccaata 16852364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28783126 - 28783084
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| |||||  ||||||||||    
T  28783126 tgagaccttgaggaggagcacactcccaggtctcaagccaata 28783084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44780124 - 44780165
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaat 42  Q
    ||||||||||||||||||||||||| || || ||||||||||    
T  44780124 tgagaccttgaggaggagcacactcccaagtcccaagccaat 44780165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18897232 - 18897192
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaa 41  Q
    |||||||||||||||||||||||||| |||| |||| ||||    
T  18897232 tgagaccttgaggaggagcacactctaaggtcccaaaccaa 18897192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26688931 - 26688891
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaa 41  Q
    |||||||||||||||||||||||||  |||| |||||||||    
T  26688931 tgagaccttgaggaggagcacactccaaggtcccaagccaa 26688891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37480141 - 37480099
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  37480141 tgagaccttgaggaggagcacactctcaggtcccaagccaata 37480099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 42327405 - 42327447
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  42327405 tgagaccttgaggaggagcacactcccaggtcccaagccaata 42327447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 42922473 - 42922438
Alignment:
Q  8 ttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||||||| |||||||||||||||||    
T  42922473 ttgaggaggagcacactcccaggttccaagccaata 42922438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4262312 - 4262354
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||  ||||| |||||||||||    
T  4262312 tgagaccttgaggaggagcacactgccaggtcccaagccaata 4262354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11062426 - 11062384
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||| ||||||||| || ||||||||||||||    
T  11062426 tgagaccttgaggagaagcacactcccaagttccaagccaata 11062384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19244175 - 19244133
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||| |||||||||||||||||||| ||||| |||||    
T  19244175 tgagaccttggggaggagcacactctcaggtcccaagtcaata 19244133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 21195686 - 21195724
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagcc 39  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  21195686 tgagaccttgaggaggagcacactcccaagttccaagcc 21195724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 29503337 - 29503295
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||    
T  29503337 tgagaccttgaggaggagcacactcccaggtcccaaaccaata 29503295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 12086140 - 12086181
Alignment:
Q  2 gagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||||||||||||  ||||| |||||||||||    
T  12086140 gagaccttgaggaggagcacacttccaggtcccaagccaata 12086181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 24191894 - 24191862
Alignment:
Q  11 aggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||| |||||||||||    
T  24191894 aggaggagcacactctcaggtcccaagccaata 24191862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30359720 - 30359680
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaa 41  Q
    |||||||||||||||||||||||||  |||| |||||||||    
T  30359720 tgagaccttgaggaggagcacactccaaggtcccaagccaa 30359680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 34041598 - 34041626
Alignment:
Q  1 tgagaccttgaggaggagcacactctcag 29  Q
    |||||||||||||||||||||||||||||    
T  34041598 tgagaccttgaggaggagcacactctcag 34041626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 42602618 - 42602578
Alignment:
Q  3 agaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||| |||||||||||| ||||| |||||||||||    
T  42602618 agaccttgagaaggagcacactcccaggtcccaagccaata 42602578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14285227 - 14285186
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaat 42  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  14285227 tgagaccttgaggaggagcacactcccaggttccaagccaat 14285186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 34984870 - 34984830
Alignment:
Q  3 agaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  34984870 agaccttgaggaggagcacactcccaggttccaagccaata 34984830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25627123 - 25627081
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  25627123 tgagaccttgaggaggagcacactcccaagttccaagccaata 25627081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30883208 - 30883250
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  30883208 tgagaccttgaggaggagcacactcccaggtcccaagccaata 30883250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 87433 - 87475
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||    
T  87433 tgagaccttgaggaggagcacactcccagattccaaggcaata 87475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 892484 - 892526
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||||||| ||||||| |||| |||||||||||    
T  892484 tgagaccttgaggaggagtacactctgaggtcccaagccaata 892526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16457876 - 16457834
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||||||||||||||  |||| |||||||||||    
T  16457876 tgagaccttgaggaggagcacactccaaggtcccaagccaata 16457834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 7918481 - 7918521
Alignment:
Q  3 agaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  7918481 agaccttgaggaggagtgcactcccaggttccaagccaata 7918521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 47202433 - 47202473
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaa 41  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  47202433 tgagaccttgaggaggagcacactcccaggttccaagccaa 47202473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 23378022 - 23377979
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaataa 44  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||    
T  23378022 tgagaccttgaggaggagcacactcccaggtcccaagccaataa 23377979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7292808 - 7292850
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||| |||||||||||||||||| |||||||||||||||||    
T  7292808 tgagactttgaggaggagcacactcccaggttccaagccaata 7292850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16581759 - 16581717
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  16581759 tgagaccttgaggaggagcagactcccaggttccaagccaata 16581717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37109361 - 37109403
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  37109361 tgagaccttgaggaggagcacactcccaggtcccaagccaata 37109403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 5450155 - 5450115
Alignment:
Q  5 accttgaggaggagcacactctcaggttccaagccaataat 45  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  5450155 accttgaggaggagcacactcccagattccaagccaataat 5450115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 37274471 - 37274510
Alignment:
Q  3 agaccttgaggaggagcacactctcaggttccaagccaat 42  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  37274471 agaccttgaggaggagcacactcccaggtcccaagccaat 37274510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 41683808 - 41683773
Alignment:
Q  8 ttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||| ||||||||||||||||||||||||||||||    
T  41683808 ttgagaaggagcacactctcaggttccaagccaata 41683773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1730499 - 1730541
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||| |||| ||||||||||||||||||| |||||||||||    
T  1730499 tgagactttgaagaggagcacactctcaggtcccaagccaata 1730541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7949464 - 7949506
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||||||||||||||  |||| |||||||||||    
T  7949464 tgagaccttgaggaggagcacactccgaggtcccaagccaata 7949506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31759668 - 31759710
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| || || |||||||||||    
T  31759668 tgagaccttgaggaggagcacactcccaagtcccaagccaata 31759710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38869834 - 38869792
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| ||| | |||||||||||    
T  38869834 tgagaccttgaggaggagcacactcccagatcccaagccaata 38869792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 46545777 - 46545735
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||| |||||||||||||||||||||||||  ||||||||||    
T  46545777 tgagatcttgaggaggagcacactctcaggtctcaagccaata 46545735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 11592165 - 11592205
Alignment:
Q  3 agaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||| |||||||||||||||||||||| ||||| |||||    
T  11592165 agacctggaggaggagcacactctcaggtcccaaggcaata 11592205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32992678 - 32992638
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaa 41  Q
    |||||||||||||||||||||||||  |||| |||||||||    
T  32992678 tgagaccttgaggaggagcacactccaaggtcccaagccaa 32992638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 37720227 - 37720267
Alignment:
Q  4 gaccttgaggaggagcacactctcaggttccaagccaataa 44  Q
    ||||||||||||| |||||||| ||||| ||||||||||||    
T  37720227 gaccttgaggaggggcacactcccaggtcccaagccaataa 37720267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 19972 - 20014
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  19972 tgagaccttgaggaggagcatactcccaggttccaagccaata 20014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3280495 - 3280537
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||||| ||| |||||||||||    
T  3280495 tgagaccttgaggaggagcacactctcgggtcccaagccaata 3280537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 14058319 - 14058277
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||| |||||||||||||||||||||| |||||    
T  14058319 tgagaccttgaggatgagcacactctcaggttccaagacaata 14058277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 14368347 - 14368305
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||| |||||||||||||||||||||| |||||    
T  14368347 tgagaccttgaggatgagcacactctcaggttccaagacaata 14368305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26459420 - 26459462
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  26459420 tgagaccttgaggaggagcacactcccaggtcccaagccaata 26459462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2962525 - 2962483
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||    
T  2962525 tgagatcttgaggaggagcacactcacaggttccaaaccaata 2962483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 5273602 - 5273640
Alignment:
Q  3 agaccttgaggaggagcacactctcaggttccaagccaa 41  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  5273602 agaccttgaggaggagcacactctaaggtcccaagccaa 5273640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 17113861 - 17113819
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||    
T  17113861 tgagaccttgaggagaagcacactcccaggttctaagccaata 17113819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 21558194 - 21558152
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||||||||||| ||| |||||||||| |||||    
T  21558194 tgagaccttgaggaggagcacattcttaggttccaagtcaata 21558152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22760929 - 22760887
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||    
T  22760929 tgagaccttgaggaggagcacactcccaggtcccaagtcaata 22760887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23552184 - 23552142
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||    
T  23552184 tgagaccttgaggaggagcacactcccaggtcccaagtcaata 23552142  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25021345 - 25021387
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||| |||||||||||||||||| ||||| |||||||||||    
T  25021345 tgagactttgaggaggagcacactcccaggtcccaagccaata 25021387  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 38374611 - 38374649
Alignment:
Q  3 agaccttgaggaggagcacactctcaggttccaagccaa 41  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  38374611 agaccttgaggaggagcacactctaaggtcccaagccaa 38374649  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 43215250 - 43215208
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||||||||||||||  |||| |||||||||||    
T  43215250 tgagaccttgaggaggagcacactccgaggtcccaagccaata 43215208  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5579244 - 5579284
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaa 41  Q
    |||||||||||||||||||||||||  |||| |||||||||    
T  5579244 tgagaccttgaggaggagcacactccaaggtcccaagccaa 5579284  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 19553517 - 19553478
Alignment:
Q  3 agaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  19553517 agaccttgaggaggagcacactcccagg-tccaagccaata 19553478  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 30442552 - 30442512
Alignment:
Q  3 agaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||||||| |||| ||||| |||||||||||    
T  30442552 agaccttgaggaggagcaaactcccaggtcccaagccaata 30442512  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16354902 - 16354944
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||| ||||||||||||||||| |||||||||||||||||    
T  16354902 tgagaccctgaggaggagcacactcacaggttccaagccaata 16354944  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 21960617 - 21960575
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||| |||||||||||||||||||||| |||||||||||    
T  21960617 tgagacctcgaggaggagcacactctcaggtcccaagccaata 21960575  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27093371 - 27093413
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  27093371 tgagaccttgaggaggagcacactcccaagttccaagccaata 27093413  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 53413011 - 53412969
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||||||| |||||| ||||||||||    
T  53413011 tgagaccttgaggaggagcacactcccaggttacaagccaata 53412969  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 32651448 - 32651490
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||    
T  32651448 tgagatcttgaggaggagcacactcccaggtcccaagccaata 32651490  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37788475 - 37788517
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||||||||||||||  |||||||||| |||||    
T  37788475 tgagaccttgaggaggagcacactcctaggttccaagtcaata 37788517  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10445149 - 10445190
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaat 42  Q
    |||||||| |||||||||||||||| ||||| ||||||||||    
T  10445149 tgagacctcgaggaggagcacactcccaggtcccaagccaat 10445190  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 26481986 - 26481954
Alignment:
Q  8 ttgaggaggagcacactctcaggttccaagcca 40  Q
    |||||||||||||||||||||||| ||||||||    
T  26481986 ttgaggaggagcacactctcaggtcccaagcca 26481954  T

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Target: scaffold0258 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15333 - 15375
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||| |||||||||||||||| ||||| |||||||||||    
T  15333 tgagacctcgaggaggagcacactcccaggtcccaagccaata 15375  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 10338184 - 10338226
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||||||||||||||||||||  |||| |||||||||||    
T  10338184 tgagaccttgaggaggagcacactcctaggtcccaagccaata 10338226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 12188317 - 12188355
Alignment:
Q  5 accttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  12188317 accttgaggaggagcacactcccaggtcccaagccaata 12188355  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31623001 - 31623043
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||| |||||||||||||||| ||||| |||||||||||    
T  31623001 tgagacctcgaggaggagcacactcccaggtcccaagccaata 31623043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31847095 - 31847137
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    ||||||||||||||| | |||||||| ||||||||||||||||    
T  31847095 tgagaccttgaggagtaacacactctaaggttccaagccaata 31847137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33549170 - 33549128
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaagccaata 43  Q
    |||||||| |||||||||||||||| ||||| |||||||||||    
T  33549170 tgagacctcgaggaggagcacactcccaggtcccaagccaata 33549128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23910121 - 23910157
Alignment:
Q  1 tgagaccttgaggaggagcacactctcaggttccaag 37  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  23910121 tgagaccttgaggaggagcacactcccaggtcccaag 23910157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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