View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1756_low_18 (Length: 300)
Name: NF1756_low_18
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1756_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 51679732 - 51680004
Alignment:
| Q |
17 |
tttcaaactacaaacctataagttggaagtgcaaatgtggggactactttttcaacccttaattcactcaaaattggatcaaccatatttatttattttg |
116 |
Q |
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| T |
51679732 |
tttcaaactacaaacctataagttggaagtgcaaatgtggggactactttttcaacccttaattcactcaaaattggatcaaccatatttatttattttg |
51679831 |
T |
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| Q |
117 |
gaataaataaatactccaagtatatattaattaattaatttttgtctctctatctcttagcaatgttgcctctcaccttgtatatggtagatatttggca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51679832 |
gaataaataaatactccaagtatatattaattaattaatttttgtctctctatctcttagcaatgttgcctctcaccttgtatatggtagatatttggca |
51679931 |
T |
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| Q |
217 |
actatatagtacatattattttatgacttagtttttgcttttaagactcgtttgtaagcatttgttatttctct |
290 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51679932 |
actatatagtacatattattttatgactt-gtttttgcttttaagactcgtttgtaagcatttgttatttctct |
51680004 |
T |
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