View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1756_low_20 (Length: 297)
Name: NF1756_low_20
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1756_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 146 - 276
Target Start/End: Original strand, 11612208 - 11612338
Alignment:
| Q |
146 |
ttaattccccatatgaaaccgttgaacatttttcaactttcacactagcttccaccacaaattcatgaagaatatgaaccactttatcacaatcacaatt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11612208 |
ttaattccccatatgaaaccgttgaacatttttcaactttcacactagcttccaccacaaattcatgaagaatatgaaccactttatcacaatcacaatt |
11612307 |
T |
|
| Q |
246 |
cacaattcagaataccctcttgagttttgat |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
11612308 |
cacaattcagaataccctcttgagttttgat |
11612338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 2136551 - 2136625
Alignment:
| Q |
15 |
atattggagaaacatcaataagcttgaatccaagctccgtagctctcatttagttgctcacgccttctcaatttg |
89 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2136551 |
atattggagaaacatcaacaagcttgaatccaagctccgtagctctcatttggttgctcacgccttctcaatttg |
2136625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University