View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1756_low_21 (Length: 290)
Name: NF1756_low_21
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1756_low_21 |
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| [»] scaffold0224 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 13499 - 13789
Alignment:
| Q |
1 |
ctctttatcatgaaacctactataaagaaatcaagcacaaaatcatgannnnnnnnnnn-gtcattagctcatcatattaggattttgccaattctgctc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13499 |
ctctttatcatgaaacctactataaagaaatcaagcacaaaatcatgattttttttttttgtcattagctcatcatattaggattttgccaattctgctc |
13598 |
T |
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| Q |
100 |
acatcagacaacaaactagtaatcgatgataacttccaccgcatatgaaactatgaaagtaaaccattgagtagaaaacaacaaagtctctattttggag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
13599 |
acatcagacaacaaactagtaatcgatgataacttccaccgcatatgaaactatgaaagtaaaccactgagtagaaaacaacaaagtctttattttggag |
13698 |
T |
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| Q |
200 |
aaaactttctaggtcccaacagtagcatcaggggtgagagcatcgttatcacttgtgaacagcaaacatgtgaggatgaagatggttcatc |
290 |
Q |
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| T |
13699 |
aaaacattctaagtaccaataatagcattaggggtgagagcatcgttatcacttgtgaacagcaaacatgtgaagatgaaggtggttcatc |
13789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 42933272 - 42932982
Alignment:
| Q |
1 |
ctctttatcatgaaacctactataaagaaatcaagcacaaaatcatgannnnnnnnnnn-gtcattagctcatcatattaggattttgccaattctgctc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42933272 |
ctctttatcatgaaacctactataaagaaatcaagcacaaaatcatgattttttttttttgtcattagctcatcatattaggattttgccaattctgctc |
42933173 |
T |
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| Q |
100 |
acatcagacaacaaactagtaatcgatgataacttccaccgcatatgaaactatgaaagtaaaccattgagtagaaaacaacaaagtctctattttggag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
42933172 |
acatcagacaacaaactagtaatcgatgataacttccaccgcatatgaaactatgaaagtaaaccactgagtagaaaacaacaaagtctttattttggag |
42933073 |
T |
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| Q |
200 |
aaaactttctaggtcccaacagtagcatcaggggtgagagcatcgttatcacttgtgaacagcaaacatgtgaggatgaagatggttcatc |
290 |
Q |
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||||| ||||| || |||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
42933072 |
aaaacattctaagtaccaataatagcattaggggtgagagcatcgttatcacttgtgaacagcaaacatgtgaagatgaaggtggttcatc |
42932982 |
T |
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