View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1756_low_25 (Length: 249)

Name: NF1756_low_25
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1756_low_25
NF1756_low_25
[»] chr6 (14 HSPs)
chr6 (1-235)||(23130270-23130502)
chr6 (2-81)||(16766725-16766804)
chr6 (8-100)||(18367870-18367962)
chr6 (2-100)||(10339058-10339157)
chr6 (2-100)||(17327594-17327686)
chr6 (1-32)||(9750450-9750481)
chr6 (4-90)||(9107313-9107399)
chr6 (2-100)||(31384948-31385045)
chr6 (11-72)||(11352398-11352459)
chr6 (8-61)||(16488562-16488615)
chr6 (39-100)||(34595188-34595249)
chr6 (1-33)||(8101112-8101144)
chr6 (1-81)||(21223718-21223798)
chr6 (5-49)||(34384959-34385003)
[»] scaffold0036 (1 HSPs)
scaffold0036 (3-100)||(9680-9777)
[»] chr3 (18 HSPs)
chr3 (1-100)||(17005552-17005651)
chr3 (39-99)||(16192667-16192727)
chr3 (39-100)||(11252030-11252091)
chr3 (2-100)||(10690196-10690293)
chr3 (4-80)||(11665974-11666050)
chr3 (2-97)||(28812543-28812638)
chr3 (39-105)||(27505305-27505371)
chr3 (47-100)||(27277784-27277836)
chr3 (2-70)||(14209141-14209209)
chr3 (1-100)||(8039768-8039867)
chr3 (1-100)||(14216919-14217018)
chr3 (1-100)||(14223048-14223147)
chr3 (1-32)||(26917297-26917328)
chr3 (54-100)||(11610578-11610624)
chr3 (2-91)||(4987233-4987322)
chr3 (1-81)||(15796246-15796326)
chr3 (1-81)||(18446672-18446752)
chr3 (4-100)||(34185056-34185152)
[»] chr2 (17 HSPs)
chr2 (2-100)||(11223797-11223894)
chr2 (1-105)||(35056895-35056999)
chr2 (2-100)||(44860348-44860446)
chr2 (2-91)||(28524454-28524543)
chr2 (2-100)||(17776615-17776713)
chr2 (2-100)||(36756277-36756375)
chr2 (2-100)||(27286225-27286323)
chr2 (2-100)||(34784915-34785013)
chr2 (2-49)||(18889575-18889622)
chr2 (1-100)||(22084760-22084864)
chr2 (1-100)||(24975259-24975357)
chr2 (55-105)||(12748737-12748787)
chr2 (34-100)||(38117103-38117169)
chr2 (2-31)||(22550254-22550283)
chr2 (2-31)||(31808105-31808134)
chr2 (2-59)||(38355861-38355918)
chr2 (4-100)||(37419773-37419869)
[»] chr1 (14 HSPs)
chr1 (2-100)||(9828072-9828170)
chr1 (2-100)||(47989525-47989623)
chr1 (2-96)||(16164252-16164346)
chr1 (40-100)||(18190052-18190112)
chr1 (2-100)||(5944311-5944409)
chr1 (2-100)||(6427492-6427590)
chr1 (2-59)||(34371741-34371798)
chr1 (2-49)||(25361914-25361961)
chr1 (2-32)||(7918212-7918242)
chr1 (39-105)||(18337383-18337449)
chr1 (39-81)||(31015091-31015133)
chr1 (2-100)||(31694643-31694741)
chr1 (8-64)||(25934650-25934706)
chr1 (2-54)||(44482258-44482310)
[»] scaffold0136 (1 HSPs)
scaffold0136 (2-91)||(3791-3880)
[»] chr7 (16 HSPs)
chr7 (4-91)||(25822685-25822772)
chr7 (3-96)||(6630849-6630942)
chr7 (2-90)||(24339670-24339758)
chr7 (61-105)||(38134334-38134378)
chr7 (1-48)||(3520327-3520374)
chr7 (49-100)||(21568565-21568616)
chr7 (4-59)||(26329356-26329411)
chr7 (39-105)||(598262-598328)
chr7 (2-32)||(5548704-5548734)
chr7 (2-32)||(18013075-18013105)
chr7 (66-100)||(38804493-38804527)
chr7 (39-105)||(43027403-43027469)
chr7 (39-100)||(9778559-9778620)
chr7 (2-91)||(32308148-32308237)
chr7 (51-104)||(40287302-40287355)
chr7 (4-48)||(41811668-41811712)
[»] scaffold0123 (1 HSPs)
scaffold0123 (2-100)||(44458-44556)
[»] chr8 (9 HSPs)
chr8 (2-100)||(26902108-26902206)
chr8 (2-100)||(11927019-11927117)
chr8 (2-100)||(29447472-29447570)
chr8 (2-105)||(15816057-15816160)
chr8 (2-49)||(28384978-28385025)
chr8 (2-100)||(8343344-8343442)
chr8 (2-100)||(11944693-11944791)
chr8 (39-104)||(5813646-5813711)
chr8 (2-91)||(22197684-22197773)
[»] chr5 (16 HSPs)
chr5 (2-72)||(18592101-18592171)
chr5 (9-104)||(36642692-36642786)
chr5 (4-100)||(3966533-3966629)
chr5 (2-100)||(39698569-39698667)
chr5 (8-64)||(6401532-6401588)
chr5 (39-91)||(42893414-42893466)
chr5 (2-81)||(21542058-21542137)
chr5 (3-64)||(35904674-35904732)
chr5 (13-103)||(30183588-30183678)
chr5 (39-100)||(21191000-21191061)
chr5 (40-105)||(21576684-21576749)
chr5 (8-61)||(21814295-21814348)
chr5 (22-58)||(12641722-12641758)
chr5 (68-100)||(13287357-13287389)
chr5 (39-99)||(26312823-26312883)
chr5 (39-91)||(31084382-31084434)
[»] scaffold0019 (1 HSPs)
scaffold0019 (4-100)||(71755-71851)
[»] chr4 (10 HSPs)
chr4 (6-81)||(30982830-30982905)
chr4 (2-100)||(24613634-24613732)
chr4 (2-100)||(27706110-27706208)
chr4 (55-104)||(34594204-34594253)
chr4 (3-64)||(44132613-44132674)
chr4 (2-64)||(22234859-22234921)
chr4 (8-64)||(5414141-5414197)
chr4 (1-33)||(8402742-8402774)
chr4 (1-81)||(9825568-9825648)
chr4 (56-100)||(11596301-11596345)
[»] scaffold0003 (2 HSPs)
scaffold0003 (2-100)||(241622-241720)
scaffold0003 (54-100)||(236918-236964)
[»] scaffold0008 (1 HSPs)
scaffold0008 (2-91)||(263314-263403)
[»] scaffold0512 (1 HSPs)
scaffold0512 (39-105)||(4975-5041)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-81)||(84925-85005)
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-81)||(56397-56477)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-81)||(126742-126822)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 23130502 - 23130270
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||| |||||||  |||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23130502 tataattcagtttaattat--gtgtcagtgtcatgttggtgtcagacacgacacgtgtctgatatcgggacatgcctaatctgaggagtgtatgtgcttc 23130405  T
Q  101 gtagcggtttgtattctaaagtgaatcgcttggtgagctaaatgcaaccatatctcatcttggtggttaataaaaatatttatgggatacatactacaca 200  Q
    | || ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||    
T  23130404 gcagtggtttgtattctaaagtgaatcgcttgatgagctaaatgcaaccatatttcatctttgtggttaataagaatatttatgggatacatactacaca 23130305  T
Q  201 attagaattgaagtacaatttctattacttatatg 235  Q
    |||||||||||||||||||||||||||||||||||    
T  23130304 attagaattgaagtacaatttctattacttatatg 23130270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 16766725 - 16766804
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatc 81  Q
    ||||||||||||||||| | ||||| ||||| |||  ||||| ||||||||||||||| |||| ||||||| ||||||||    
T  16766725 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatc 16766804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 18367870 - 18367962
Alignment:
Q  8 cagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||||||| ||||| |||  ||||||||||| |||| |||||||||  |||||| |||| |||  ||||||||  |||||||    
T  18367870 cagtgtaattatatgtgtcggtgtcgtgtcggtgtcagacacgacacatgtctgacacggggacacgccttatccaaggagtgtccgtgcttc 18367962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 10339157 - 10339058
Alignment:
Q  2 ataattcagtgt-aattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||||||||| ||||||||||||||||| | |||  ||||| ||||| |||| |||| ||||  |||||| |||||||| |||||||||  |||||||    
T  10339157 ataattcagtgttaattatatgtgtcagtgccgtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttc 10339058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 17327686 - 17327594
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||| ||||||| ||||||||||||||||      ||||| ||||| ||||||||||||||  |||||| |||||||| |||||||||  |||||||    
T  17327686 ataatttagtgtaactatatgtgtcagtgtc------gtgtcggacacgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttc 17327594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 9750481 - 9750450
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtc 32  Q
    ||||||||||||||||||||||||||||||||    
T  9750481 tataattcagtgtaattatatgtgtcagtgtc 9750450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 9107399 - 9107313
Alignment:
Q  4 aattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtg 90  Q
    ||||||||||||||| | ||||| ||||| |||  ||||| ||||||||  ||||| |||| |||||||  ||||||| ||||||||    
T  9107399 aattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacgtgtgtccgacaccgggacacacctaatccgaggagtg 9107313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 31384948 - 31385045
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||||| | ||||||||||| || | ||||  ||||| |||||||||  ||| ||||||| ||||||||  ||||||||  |||||||    
T  31384948 ataattcagtgtaattacaagtgtcagtgtcgtg-tagtgttggacacgacacgtgtcctacaccgggacacgcctaatccaaggagtgtccgtgcttc 31385045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 11352398 - 11352459
Alignment:
Q  11 tgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggaca 72  Q
    ||||||||||||| ||| |||| |||  || |||||||||||||||||| |||||| |||||    
T  11352398 tgtaattatatgtatcaatgtcgtgtcggtatcagacacaacacgtgtccgacatcaggaca 11352459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 16488615 - 16488562
Alignment:
Q  8 cagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctg 61  Q
    ||||||||||||||||||| ||||| |||  ||||| ||||| |||||||||||    
T  16488615 cagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctg 16488562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 34595188 - 34595249
Alignment:
Q  39 gtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||| ||||| |||||||||||||| |||||||  ||||||| |||||||||  |||||||    
T  34595188 gtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttc 34595249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8101112 - 8101144
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtca 33  Q
    |||||| ||||||||||||||||||||||||||    
T  8101112 tataatccagtgtaattatatgtgtcagtgtca 8101144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 21223798 - 21223718
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatc 81  Q
    |||||||  |||||||||||| |||||||||| |||  |||||  ||||||| |||||| |||| |||| || ||||||||    
T  21223798 tataattatgtgtaattatatatgtcagtgtcgtgtcggtgtcgaacacaacgcgtgtccgacaacgggtcacgcctaatc 21223718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 34385003 - 34384959
Alignment:
Q  5 attcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacac 49  Q
    |||||||||||||||||||||| || || |||| |||||||||||    
T  34385003 attcagtgtaattatatgtgtcggtttcgtgttggtgtcagacac 34384959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 9777 - 9680
Alignment:
Q  3 taattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||||| |||| ||||||||||||||||| |  ||||| |||||||||  |||||||    
T  9777 taattcagtgtaattatatgtgtcggtgtcgtgttggtgtcagacacgacacttgtctgacatcgggacacgtataatccgaggagtgtccgtgcttc 9680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 17005651 - 17005552
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||||||||||||||||| ||||| ||||  |||| |||||||||| ||||||||||||||| | |||||   |||||| ||||||||| ||||||||    
T  17005651 tataattcagtgtaattataagtgtcggtgttgtgttggtgtcagacataacacgtgtctgacaccaggacacctctaatccgaggagtgtttgtgcttc 17005552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 16192727 - 16192667
Alignment:
Q  39 gtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgctt 99  Q
    ||||||||||| |||||||||||||| |||||||| |||||| |||||||||| |||||||    
T  16192727 gtgtcagacacgacacgtgtctgacaccgggacatacctaatatgaggagtgtttgtgctt 16192667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 11252030 - 11252091
Alignment:
Q  39 gtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||||||||| | |||||| ||| |||||||| ||||||||| ||||||||    
T  11252030 gtgtcagacacaacacgtgtccggcatcggaacacgcctaatccgaggagtgtctgtgcttc 11252091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 10690293 - 10690196
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgttt-gtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||||||||||||||||| |||| || |  ||||| ||||| ||||||||||||||||||||  | ||||  ||||||| ||||| ||||||||||||    
T  10690293 ataattcagtgtaattatatttgtcggtat--tgtttagtgtcggacacaacacgtgtctgacacggcgacacacctaatccgaggaatgtatgtgcttc 10690196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 11665974 - 11666050
Alignment:
Q  4 aattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaat 80  Q
    |||| |||||||||||||||||| ||||| ||||  ||| |||||| |||||||||||| ||||| ||| |||||||    
T  11665974 aatttagtgtaattatatgtgtcggtgtcgtgttgatgttagacacgacacgtgtctgatatcggaacacgcctaat 11666050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 28812543 - 28812638
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgc 97  Q
    ||||||||||||| ||| | ||||| ||||| |||| ||||||||||| | || |||| |||| | ||||| |||||||| ||||||||| |||||    
T  28812543 ataattcagtgtagttacaagtgtcggtgtcgtgttggtgtcagacacgatacatgtccgacagcaggacacgcctaatccgaggagtgtctgtgc 28812638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 27505305 - 27505371
Alignment:
Q  39 gtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttcgtagc 105  Q
    ||||| ||||| ||||||||| |||| |||||||||||||||| |||||||||  ||||||| ||||    
T  27505305 gtgtctgacacgacacgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcatagc 27505371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 27277836 - 27277784
Alignment:
Q  47 cacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||| |||| ||||||||| |||||| ||||||||||||||||||    
T  27277836 cacaacacgtgtccgaca-cgggacatgtctaatccgaggagtgtatgtgcttc 27277784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 14209141 - 14209209
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcggga 70  Q
    ||||||||||||||||| | ||||||||||| |||  ||||| ||||| ||||||||  ||||||||||    
T  14209141 ataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacacgtgtacgacatcggga 14209209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 8039867 - 8039768
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||||||||||||||||||||||| ||||| |||  ||||| ||||  | || |||| |||| ||||||| || ||||| || |||| | ||||||||    
T  8039867 tataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatgagacatgtccgacaccgggacacgcttaatccgaagagtatctgtgcttc 8039768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 14216919 - 14217018
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||||||||||||||| | ||||| ||||| |||| ||||| ||||| ||||||||  ||||  ||||||  ||||||| ||| |||||  |||||||    
T  14216919 tataattcagtgtaattacaagtgtccgtgtcgtgttagtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttc 14217018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 14223048 - 14223147
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||||||||||||||| | ||||| ||||| |||| ||||| ||||| ||||||||  ||||  ||||||  ||||||| ||| |||||  |||||||    
T  14223048 tataattcagtgtaattacaagtgtccgtgtcgtgttagtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttc 14223147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 26917297 - 26917328
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtc 32  Q
    ||||||||||||||||||||||||||||||||    
T  26917297 tataattcagtgtaattatatgtgtcagtgtc 26917328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 11610578 - 11610624
Alignment:
Q  54 cgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||| |||||||||||| ||||||||||||||||||  |||||||    
T  11610578 cgtgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttc 11610624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 4987322 - 4987233
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgt 91  Q
    ||||||||||||||||| | ||||  ||| | |||  ||||  ||||| ||||||||| |||| ||||||| |||||||| |||||||||    
T  4987322 ataattcagtgtaattacaagtgttggtgacgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgt 4987233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 15796326 - 15796246
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatc 81  Q
    |||||||||||||||||| |  |||| ||||| |||  ||||| |||||||||||||||  ||| ||| ||| ||||||||    
T  15796326 tataattcagtgtaattacaattgtcggtgtcgtgtaggtgtcggacacaacacgtgtccaacaccggaacacgcctaatc 15796246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 18446752 - 18446672
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatc 81  Q
    |||||||  |||||||||||| |||||||||| |||  || ||  ||||||| ||||||||||| |||| || ||||||||    
T  18446752 tataattatgtgtaattatatatgtcagtgtcgtgtcggtttcgaacacaacgcgtgtctgacaacgggtcacgcctaatc 18446672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 34185152 - 34185056
Alignment:
Q  4 aattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||| | ||||| ||||| |||   |||| ||||  ||| ||||| |||| ||||||| |||||||| |||||||||  |||||||    
T  34185152 aattcagtgtaattacaagtgtcggtgtcgtgtccatgtcggacaagacatgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttc 34185056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 11223894 - 11223797
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||||| | ||||| |||||||||  ||||| ||||| |||| ||||||||| ||||||| ||||||||||||||||||  |||||||    
T  11223894 ataattcagtgtaattacaagtgtcggtgtcatgtaggtgtcggacacgacac-tgtctgacaccgggacacgcctaatctgaggagtgtccgtgcttc 11223797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 35056895 - 35056999
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||||||||||||||||||||||| ||||| |||  ||||| ||||| ||||||||| ||||  |  ||| ||||||||||||||||||  |||||||    
T  35056895 tataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttc 35056994  T
Q  101 gtagc 105  Q
     ||||    
T  35056995 atagc 35056999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 44860348 - 44860446
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||||||||||||| ||||| |||| ||||  ||||| ||| ||||| ||||||||||||  ||||||  |||||||||  |||||||    
T  44860348 ataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggacacgacatgtgtccgacatcgggacacacctaattcgaggagtgtccgtgcttc 44860446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 28524454 - 28524543
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgt 91  Q
    |||||||||||||||||||||||||  |||  |||| ||||| ||||||||||||||||||||  |  ||| |||||||||||| |||||    
T  28524454 ataattcagtgtaattatatgtgtcgttgttgtgttggtgtcggacacaacacgtgtctgacacagaaacacgcctaatctgagaagtgt 28524543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 17776615 - 17776713
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||| ||||||||||||||||||||||||||| ||  ||||  ||||| ||  ||||| ||| |||||||| |||||||| |||||||||  |||||||    
T  17776615 ataagtcagtgtaattatatgtgtcagtgtcaagtcggtgttggacacgacgtgtgtccgacctcgggacaggcctaatccgaggagtgtccgtgcttc 17776713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 36756375 - 36756277
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||||||| ||||| ||||| |||| |||||  ||||||||| |||| |||| ||  ||| ||||||||  |||||||| ||||||||    
T  36756375 ataattcagtgtaattataagtgtcggtgtcgtgttagtgtcgaacacaacacatgtccgacaccgcaacacgcctaatcctaggagtgtctgtgcttc 36756277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 27286323 - 27286225
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||| |||||||||||| |||||| ||||||||   |||| ||||| |||| |||| |||| ||||||||  ||||||| | |||||| ||||||||    
T  27286323 ataattaagtgtaattataggtgtcaatgtcatgtcgatgtcggacacgacacatgtccgacaccgggacatatctaatctaaagagtgtctgtgcttc 27286225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 34785013 - 34784915
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||| |||||||||||||||||| ||||| |||  || || ||||| |||| |||||||||  |||||| |||| ||  ||||||||| ||||||||    
T  34785013 ataatttagtgtaattatatgtgtcggtgtcgtgtcggtatcggacacgacacctgtctgacacggggacacgccttattcgaggagtgtctgtgcttc 34784915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 18889622 - 18889575
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacac 49  Q
    ||||||||||||||| ||||||||| ||||| |||||||||| |||||    
T  18889622 ataattcagtgtaatcatatgtgtcggtgtcttgtttgtgtcggacac 18889575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 22084864 - 22084760
Alignment:
Q  1 tataattcagtgtaatt--atatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctga---catcgggacatgcctaatctgaggagtgtatgt 95  Q
    |||||||||||||||||  ||||||| | || || |||  ||||| ||||||||||||||||||   || ||||||| |||||||| || |||||| |||    
T  22084864 tataattcagtgtaattttatatgtgccggtatcgtgtcagtgtcggacacaacacgtgtctgacaccaccgggacacgcctaatccgatgagtgtctgt 22084765  T
Q  96 gcttc 100  Q
    |||||    
T  22084764 gcttc 22084760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 24975357 - 24975259
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||| |||||| ||| ||||| |||  ||||||||||| ||| ||||| ||||  ||||||   ||||||||||||||||  |||||||    
T  24975357 tataattcagtgtaaatatatgcgtcggtgtcgtgtccgtgtcagacac-acatgtgtccgacactgggacaaatctaatctgaggagtgtccgtgcttc 24975259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 12748737 - 12748787
Alignment:
Q  55 gtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttcgtagc 105  Q
    ||||| |||| ||||||||||||||| |||||||||| |||||||| ||||    
T  12748737 gtgtcggacaccgggacatgcctaatttgaggagtgtctgtgcttcatagc 12748787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 38117169 - 38117103
Alignment:
Q  34 tgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||| ||||| ||||||||||||||| |||| ||||||| |||||||| |||| ||||  |||||||    
T  38117169 tgttggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttc 38117103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 22550283 - 22550254
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgt 31  Q
    ||||||||||||||||||||||||||||||    
T  22550283 ataattcagtgtaattatatgtgtcagtgt 22550254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 31808105 - 31808134
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgt 31  Q
    ||||||||||||||||||||||||||||||    
T  31808105 ataattcagtgtaattatatgtgtcagtgt 31808134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 38355918 - 38355861
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtc 59  Q
    |||||||||||| |||||||||||| ||||||| || ||||  || ||||||||||||    
T  38355918 ataattcagtgtgattatatgtgtcggtgtcatattggtgttggatacaacacgtgtc 38355861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 37419773 - 37419869
Alignment:
Q  4 aattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||| | ||| | ||||| |||  ||||| ||||| |  |||||| |||| ||||||| |||||||| |||||||||  |||||||    
T  37419773 aattcagtgtaattacaagtgccggtgtcgtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttc 37419869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 9828072 - 9828170
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||||||||||||| |||||||| ||||| |||  ||||||||||| ||||||||| |||| ||||||| | |||||| |||||||||  |||||||    
T  9828072 ataattcagtgtaattttatgtgtcggtgtcgtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttc 9828170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 47989525 - 47989623
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||||| | ||||| ||||| |||  ||||| ||||| |||| ||||||||||||||||| |||||||| |||||||||  |||||||    
T  47989525 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttc 47989623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 16164346 - 16164252
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtg 96  Q
    |||||| | ||||||||||||||||| |||| |||| ||||  ||| ||||||||||| |||| | ||||| |||||||| || |||||||||||    
T  16164346 ataatttaatgtaattatatgtgtcattgtcgtgttggtgttggacgcaacacgtgtccgacaccaggacacgcctaatccgaagagtgtatgtg 16164252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 18190112 - 18190052
Alignment:
Q  40 tgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||||||||||||||||| |||| |||||||  ||||||| |||||||||||| |||||    
T  18190112 tgtcagacacaacacgtgtccgacaccgggacacacctaatccgaggagtgtatgcgcttc 18190052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 5944311 - 5944409
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||||||| ||||| ||||| |||   || | |||||||||| |||| |||| ||||| | |||||||| |||||||||  |||||||    
T  5944311 ataattcagtgtaattataagtgtcggtgtcgtgtcgatgacggacacaacacatgtccgacaccgggatacgcctaatccgaggagtgttcgtgcttc 5944409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 6427492 - 6427590
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||||| ||||| || | ||||||||||| |||  | ||| ||||| ||||||||| |||| ||||||| ||||||||||| ||||||  |||||||    
T  6427492 ataattcaatgtaactacaagtgtcagtgtcgtgtaggcgtcggacacgacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttc 6427590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 34371741 - 34371798
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtc 59  Q
    ||||||||||||||||||||||||| ||||| |||| ||||| || || |||||||||    
T  34371741 ataattcagtgtaattatatgtgtcggtgtcgtgttggtgtcggatacgacacgtgtc 34371798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 25361914 - 25361961
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacac 49  Q
    ||||||||||||||||||||||||||||||| |||  ||||| |||||    
T  25361914 ataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggacac 25361961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 7918242 - 7918212
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtc 32  Q
    |||||||||||||||||||||||||||||||    
T  7918242 ataattcagtgtaattatatgtgtcagtgtc 7918212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 18337383 - 18337449
Alignment:
Q  39 gtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttcgtagc 105  Q
    ||||| ||||||||||||||| ||||  ||||||||||| ||| |||||||||  ||||||| ||||    
T  18337383 gtgtcggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttcatagc 18337449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 31015091 - 31015133
Alignment:
Q  39 gtgtcagacacaacacgtgtctgacatcgggacatgcctaatc 81  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||    
T  31015091 gtgtcggacacgacacgtgtctgacatcgggacacgcctaatc 31015133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 31694741 - 31694643
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||||||| |||||| | ||||| ||||| |||  ||||| |||||||||| | |  |||| ||| ||| ||||||||||||||||||  |||||||    
T  31694741 ataattcagtataattacaagtgtcggtgtcgtgtcggtgtcggacacaacacatattcgacaccggaacacgcctaatctgaggagtgtccgtgcttc 31694643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 25934650 - 25934706
Alignment:
Q  8 cagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgaca 64  Q
    ||||||||||||||||||| || || |||  ||||| ||||| ||||||||||||||    
T  25934650 cagtgtaattatatgtgtcggtatcgtgtcggtgtcggacacgacacgtgtctgaca 25934706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 44482258 - 44482310
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacac 54  Q
    ||||||||||||||||||||||||| ||||| |||  ||||| ||||| ||||    
T  44482258 ataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacac 44482310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 3880 - 3791
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgt 91  Q
    ||||||||||||||||| | ||||||||||| |||| ||||| ||||| |||| |||| ||||||| |||| |||||||| |||||||||    
T  3880 ataattcagtgtaattacaagtgtcagtgtcgtgttggtgtcggacacgacacatgtccgacatcgagacacgcctaatccgaggagtgt 3791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 25822685 - 25822772
Alignment:
Q  4 aattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgt 91  Q
    ||||||||||||||| | ||||| ||||| | |  || || ||||| |||||||||||||||||||||||||||||||| ||||||||    
T  25822685 aattcagtgtaattacaagtgtcggtgtcgtatcggtatcggacacgacacgtgtctgacatcgggacatgcctaatctaaggagtgt 25822772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 6630942 - 6630849
Alignment:
Q  3 taattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtg 96  Q
    ||||||||||||||||||||||||  |||| |||| ||||| ||||||||||||| | |||| |  ||||  ||||||||||||||||| ||||    
T  6630942 taattcagtgtaattatatgtgtcgatgtcgtgttggtgtcggacacaacacgtgcccgacaccaagacacacctaatctgaggagtgtgtgtg 6630849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 24339670 - 24339758
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtg 90  Q
    ||||||||||||||||| | ||||| ||||| |||  ||||| ||||| |||||| || |||| ||||||| |||||||| ||||||||    
T  24339670 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtg 24339758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 38134378 - 38134334
Alignment:
Q  61 gacatcgggacatgcctaatctgaggagtgtatgtgcttcgtagc 105  Q
    |||||||||||| |||||||| |||||||||||||||||| ||||    
T  38134378 gacatcgggacacgcctaatccgaggagtgtatgtgcttcatagc 38134334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3520374 - 3520327
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagaca 48  Q
    ||||||||| |||||||||||||||| ||| |||||| ||||||||||    
T  3520374 tataattcaatgtaattatatgtgtcggtgacatgttggtgtcagaca 3520327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 21568616 - 21568565
Alignment:
Q  49 caacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||| |||||| |||| |||||||||| ||||||||||||||| ||||||||    
T  21568616 caacgcgtgtcggacaccgggacatgcttaatctgaggagtgtctgtgcttc 21568565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 26329411 - 26329356
Alignment:
Q  4 aattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtc 59  Q
    ||||||||||||||||||||||| | ||| |||  ||||||||||| |||||||||    
T  26329411 aattcagtgtaattatatgtgtcggcgtcgtgtcggtgtcagacacgacacgtgtc 26329356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 598262 - 598328
Alignment:
Q  39 gtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttcgtagc 105  Q
    ||||||||||| ||||||||| |||| ||||||| |||||||| ||| |||||  ||||||| ||||    
T  598262 gtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatagc 598328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 5548704 - 5548734
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtc 32  Q
    |||||||||||||||||||||||||||||||    
T  5548704 ataattcagtgtaattatatgtgtcagtgtc 5548734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 18013105 - 18013075
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtc 32  Q
    |||||||||||||||||||||||||||||||    
T  18013105 ataattcagtgtaattatatgtgtcagtgtc 18013075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 38804527 - 38804493
Alignment:
Q  66 cgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||||||||||||| ||||||||||||||||||    
T  38804527 cgggacatgcctaatccgaggagtgtatgtgcttc 38804493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 43027469 - 43027403
Alignment:
Q  39 gtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttcgtagc 105  Q
    ||||||||||| ||||||||| |||| ||||||| |||||||| || ||||||  ||||||| ||||    
T  43027469 gtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatagc 43027403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 9778559 - 9778620
Alignment:
Q  39 gtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||| ||||||||||||||| |||| ||||||| ||||||||  ||||||||  |||||||    
T  9778559 gtgtcggacacaacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttc 9778620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 32308148 - 32308237
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgt 91  Q
    |||||||||||||||| |||||||||||||| |||  ||||  ||||| |||| |||| |||| || ||||   |||||| |||||||||    
T  32308148 ataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgttggacacgacacatgtccgacaccgagacacagctaatccgaggagtgt 32308237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 40287355 - 40287302
Alignment:
Q  51 acacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttcgtag 104  Q
    |||| |||| |||| |||||||||||||||| |||||||||  |||||||||||    
T  40287355 acacatgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcgtag 40287302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 41811668 - 41811712
Alignment:
Q  4 aattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagaca 48  Q
    |||||| |||||| ||||||||||||||| |||| ||||||||||    
T  41811668 aattcaatgtaatcatatgtgtcagtgtcgtgttggtgtcagaca 41811712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 44556 - 44458
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||||||||||||| || || |||  ||||  ||||||||||||||| ||||  ||||||||  ||||||||| ||||| ||||||||    
T  44556 ataattcagtgtaattatatgtgtcggtatcgtgtcggtgttggacacaacacgtgtccgacactgggacatggttaatctgagaagtgtctgtgcttc 44458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 26902206 - 26902108
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||||||||||||| ||||| | |  ||||| ||||| ||||||||||| ||  |||||| |||| |||||||||||||  |||||||    
T  26902206 ataattcagtgtaattatatgtgtcggtgtcgtatgagtgtcggacacgacacgtgtctggcacggggacacgccttatctgaggagtgtccgtgcttc 26902108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 11927117 - 11927019
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||||||||||||| ||||| |||| |||||| |||| ||| || ||  |||||| |||| |||||||| || ||||||  |||||||    
T  11927117 ataattcagtgtaattatatgtgtcggtgtcgtgttggtgtcatacacgacatgtatccaacatcgagacacgcctaatccgatgagtgtccgtgcttc 11927019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 29447472 - 29447570
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||| |||||||||||||||||  ||||| |||  ||||||||||| ||| ||||| |||| ||||||| | |||||| |||||||||  |||||||    
T  29447472 ataattaagtgtaattatatgtgttggtgtcgtgtcggtgtcagacacgacatgtgtccgacaccgggacaggtctaatcggaggagtgtccgtgcttc 29447570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 15816160 - 15816057
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttcg 101  Q
    |||||| |||||||||||| ||||| ||||| |||| ||||| ||||| |||||  || |||| ||||||| |||||||| ||| |||||  |||||||     
T  15816160 ataatttagtgtaattataagtgtcggtgtcgtgttggtgtcggacacgacacgaatccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 15816061  T
Q  102 tagc 105  Q
    ||||    
T  15816060 tagc 15816057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 28385025 - 28384978
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacac 49  Q
    ||||||||||||||||||||||||| |||||||||  |||||||||||    
T  28385025 ataattcagtgtaattatatgtgtcggtgtcatgtcagtgtcagacac 28384978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 8343344 - 8343442
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||| |||||||||| | ||||||||||| |    ||||| ||||| ||||||||| |||| ||||||| |||||||| || |||||| ||||||||    
T  8343344 ataatttagtgtaattacaagtgtcagtgtcgtacacgtgtccgacacgacacgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttc 8343442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 11944693 - 11944791
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||| |||||||||||||||||||| ||||| ||||  ||||| |||| ||| || || |||| || |||| |||||||| || ||||||  |||||||    
T  11944693 ataactcagtgtaattatatgtgtcggtgtcgtgttgatgtcatacacgacatgtatccgacaccgagacacgcctaatccgatgagtgttcgtgcttc 11944791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 5813646 - 5813711
Alignment:
Q  39 gtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttcgtag 104  Q
    ||||| ||||| ||||||||| |||| ||||||| |||||||  |||||||||  |||||||||||    
T  5813646 gtgtcggacacgacacgtgtccgacaccgggacacgcctaattggaggagtgtccgtgcttcgtag 5813711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 22197773 - 22197684
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgt 91  Q
    |||||| |||||||||| | ||||||||||||   | ||||| ||||  ||||||||| |||| |||  || ||||||||||||||||||    
T  22197773 ataatttagtgtaattacaagtgtcagtgtcagtgtcgtgtcggacatgacacgtgtccgacaccggatcacgcctaatctgaggagtgt 22197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 18592101 - 18592171
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggaca 72  Q
    |||||||| |||||||||||||| | ||||| |||  ||||| ||||||||||||||||||||||||||||    
T  18592101 ataattcaatgtaattatatgtgccggtgtcgtgtcggtgtcggacacaacacgtgtctgacatcgggaca 18592171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 36642786 - 36642692
Alignment:
Q  9 agtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttcgtag 104  Q
    ||||||| |||| ||||| |||||||||| ||||| ||||| ||||||||| |||| ||||||| |||||||  |||||||||  |||||||||||    
T  36642786 agtgtaaatataagtgtcggtgtcatgttggtgtcggacacgacacgtgtccgaca-cgggacacgcctaattggaggagtgtcggtgcttcgtag 36642692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 3966533 - 3966629
Alignment:
Q  4 aattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||||||||||| ||||| |||  ||||| ||||||||| |||||  |||  |||||| | |||||| |||||||||  |||||||    
T  3966533 aattcagtgtaattatatgtgtcggtgtcgtgtcagtgtcggacacaacatgtgtccaacagagggacacgtctaatccgaggagtgtccgtgcttc 3966629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 39698569 - 39698667
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||||||||| | ||||||||||| |||  ||||| ||||| ||| || || |||| || |||| |||||||| |||||||||  |||||||    
T  39698569 ataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttc 39698667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 6401532 - 6401588
Alignment:
Q  8 cagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgaca 64  Q
    ||||||||||||||||||| ||||| |||  ||||| ||||| ||||||||||||||    
T  6401532 cagtgtaattatatgtgtcggtgtcgtgtcagtgtcggacacgacacgtgtctgaca 6401588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 42893414 - 42893466
Alignment:
Q  39 gtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgt 91  Q
    ||||||||||||||||||||| |||| | ||||| ||||||| ||||||||||    
T  42893414 gtgtcagacacaacacgtgtccgacaccaggacacgcctaatatgaggagtgt 42893466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 21542058 - 21542137
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatc 81  Q
    ||||||||||||||||| | ||||| ||||| |||  ||||| ||||| ||||||||| |||| ||||||| ||| ||||    
T  21542058 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacaccgggacacgccgaatc 21542137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 35904674 - 35904732
Alignment:
Q  3 taattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgaca 64  Q
    ||||||||||||||||||||||||    ||||||| |||||||||||||||| |||| ||||    
T  35904674 taattcagtgtaattatatgtgtc---ttcatgttggtgtcagacacaacacatgtccgaca 35904732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 30183588 - 30183678
Alignment:
Q  13 taattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttcgta 103  Q
    |||||| | ||||| ||||| |||| || |||||||| ||||||||| ||||  |||||| |||||||  ||| ||||| |||||||||||    
T  30183588 taattacaagtgtcggtgtcgtgttggtatcagacacgacacgtgtccgacactgggacacgcctaattcgagaagtgtctgtgcttcgta 30183678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 21191061 - 21191000
Alignment:
Q  39 gtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||| ||||||||||||||| |||  ||||||| |||||||| |||||||||  |||||||    
T  21191061 gtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttc 21191000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 21576749 - 21576684
Alignment:
Q  40 tgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttcgtagc 105  Q
    |||| ||||| ||||||||||||||  |||||| |||||||| |||||||||  ||||||| ||||    
T  21576749 tgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatagc 21576684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 21814295 - 21814348
Alignment:
Q  8 cagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctg 61  Q
    ||||||||||||||||||| ||||| |||  ||||| ||||| |||||||||||    
T  21814295 cagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctg 21814348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 12641722 - 12641758
Alignment:
Q  22 gtgtcagtgtcatgtttgtgtcagacacaacacgtgt 58  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  12641722 gtgtcagtgtcgtgttggtgtcagacacaacacgtgt 12641758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 13287389 - 13287357
Alignment:
Q  68 ggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||| |||||||||||||||||||||||||||    
T  13287389 ggacacgcctaatctgaggagtgtatgtgcttc 13287357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 26312823 - 26312883
Alignment:
Q  39 gtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgctt 99  Q
    ||||| ||||| | |||||||||||| | |||||  ||||||| |||||||||||||||||    
T  26312823 gtgtcggacacgatacgtgtctgacaccaggacacacctaatccgaggagtgtatgtgctt 26312883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 31084382 - 31084434
Alignment:
Q  39 gtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgt 91  Q
    ||||| ||||| ||||||||| ||||  ||||||||||||||| |||||||||    
T  31084382 gtgtcggacacgacacgtgtccgacactgggacatgcctaatccgaggagtgt 31084434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 71755 - 71851
Alignment:
Q  4 aattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||||||||||||   ||||||||||| |||  ||||| ||||||||||||||| |||| ||||||| | |||||| |||||||||  |||||||    
T  71755 aattcagtgtaattactagtgtcagtgtcgtgtcggtgtcggacacaacacgtgtccgacaccgggacacgactaatccgaggagtgtcggtgcttc 71851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 30982905 - 30982830
Alignment:
Q  6 ttcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatc 81  Q
    ||||||||||||||| ||||| ||||| |||  ||||||||||| ||||||||| |||| ||||||| ||||||||    
T  30982905 ttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatc 30982830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 24613732 - 24613634
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||||| ||||| || | ||||| |||||||||  ||||||||||| |||||||||||||| | ||||| | ||||||  ||||||||  |||||||    
T  24613732 ataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtcagacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttc 24613634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 27706208 - 27706110
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||| |||||||||| | |||| |||||| ||||  |||| ||||| |||||| || || | ||||||| |||||||||||||| |||| |||||||    
T  27706208 ataatttagtgtaattacaagtgtgagtgtcgtgttaatgtcggacacgacacgtatccgataccgggacacgcctaatctgaggaatgtacgtgcttc 27706110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 34594253 - 34594204
Alignment:
Q  55 gtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttcgtag 104  Q
    ||||||||||  |||||||||||||| |||| ||||||||||||||||||    
T  34594253 gtgtctgacacagggacatgcctaatatgagaagtgtatgtgcttcgtag 34594204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 44132674 - 44132613
Alignment:
Q  3 taattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgaca 64  Q
    ||||||||| |||||||||||||| ||||| |||| |||||  |||||||| ||||||||||    
T  44132674 taattcagtataattatatgtgtcggtgtcgtgttggtgtcgaacacaacatgtgtctgaca 44132613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 22234921 - 22234859
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgaca 64  Q
    |||||||||||||||| |||||||| ||||| |||  ||||| ||||| ||||||||| ||||    
T  22234921 ataattcagtgtaattctatgtgtcggtgtcgtgtcggtgtctgacacgacacgtgtccgaca 22234859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 5414197 - 5414141
Alignment:
Q  8 cagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgaca 64  Q
    |||||||||||||||| || ||||| |||  ||||| ||||| ||||||||||||||    
T  5414197 cagtgtaattatatgtatcggtgtcgtgtcagtgtcggacacgacacgtgtctgaca 5414141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8402774 - 8402742
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtca 33  Q
    ||||||||||||||||||||||| |||||||||    
T  8402774 tataattcagtgtaattatatgtctcagtgtca 8402742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 9825568 - 9825648
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatc 81  Q
    |||||||  |||||||||||| |||||||||| |||  || ||  ||||||| ||||||||||| |||| || ||||||||    
T  9825568 tataattatgtgtaattatatatgtcagtgtcgtgtcggtttcgaacacaacgcgtgtctgacaacgggtcacgcctaatc 9825648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 11596345 - 11596301
Alignment:
Q  56 tgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||| |||||||||||| ||||||||||||||||||  |||||||    
T  11596345 tgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttc 11596301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 241622 - 241720
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    |||||| |||||||||||  ||||| ||||| |||| ||||| ||||| ||||||||| |||| ||||||| |||||||| ||| |||||  |||||||    
T  241622 ataatttagtgtaattatgagtgtcggtgtcgtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttc 241720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 236964 - 236918
Alignment:
Q  54 cgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttc 100  Q
    ||||||||||| |||||||  ||||||||||||||||| ||||||||    
T  236964 cgtgtctgacaccgggacacacctaatctgaggagtgtctgtgcttc 236918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 263403 - 263314
Alignment:
Q  2 ataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgt 91  Q
    ||||||||||||||||||| ||||||||||| |||  ||||||||||| ||||||||  || | |  |||| |||||||| |||||||||    
T  263403 ataattcagtgtaattataagtgtcagtgtcgtgtcggtgtcagacacgacacgtgttcgataccaagacacgcctaatccgaggagtgt 263314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 5041 - 4975
Alignment:
Q  39 gtgtcagacacaacacgtgtctgacatcgggacatgcctaatctgaggagtgtatgtgcttcgtagc 105  Q
    ||||| ||||| ||||||||| ||||| | ||||||||||||| ||||||||| |||||||| ||||    
T  5041 gtgtcggacacgacacgtgtccgacattgagacatgcctaatccgaggagtgtctgtgcttcatagc 4975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 85005 - 84925
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatc 81  Q
    |||||||  |||||||||||| |||| |||||||||   ||||  |||||||||||||| |||| | ||||| ||||||||    
T  85005 tataattatgtgtaattatatatgtcggtgtcatgtcgatgtcgaacacaacacgtgtccgacaacaggacacgcctaatc 84925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 56397 - 56477
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatc 81  Q
    |||||||  |||||||||||| |||||||||| |||  || ||  ||||||| ||||||||||| |||| || ||||||||    
T  56397 tataattatgtgtaattatatatgtcagtgtcgtgtcggtttcgaacacaacgcgtgtctgacaacgggtcacgcctaatc 56477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 126742 - 126822
Alignment:
Q  1 tataattcagtgtaattatatgtgtcagtgtcatgtttgtgtcagacacaacacgtgtctgacatcgggacatgcctaatc 81  Q
    |||||||  |||||||||||| |||||||||| |||  || ||  ||||||| ||||||||||| |||| || ||||||||    
T  126742 tataattatgtgtaattatatatgtcagtgtcgtgtcggtttcgaacacaacgcgtgtctgacaacgggtcacgcctaatc 126822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University