View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1756_low_3 (Length: 549)
Name: NF1756_low_3
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1756_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 17 - 537
Target Start/End: Original strand, 47192417 - 47192937
Alignment:
| Q |
17 |
cataccaatttgtcaccattgattatccaaagaaacttcatagattactcaaaatggatcatgatggtaacccacgtgtttatagcttcaatgataaaac |
116 |
Q |
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| T |
47192417 |
cataccaatttgtcaccattgattatccaaagaaacttcatagattactcaaaatggatcatgatggtaacccacgtgtttatagcttcaatgataaaac |
47192516 |
T |
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| Q |
117 |
taagacatgggaagtttcatggcaagctattgctgaaccatgtgaggttcatggtatttgtggagaaaatagcatgtgtagttatgatcctgttaatgga |
216 |
Q |
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| T |
47192517 |
taagacatgggaagtttcatggcaagctattgctgaaccatgtgaggttcatggtatttgtggagaaaatagcatgtgtagttatgatcctgttaatgga |
47192616 |
T |
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| Q |
217 |
agaacatgttattgtttgaaaggttacaagttgaagaatcgtaatgattggacacaagggtgtgagcctgagtttaaacctgctgatctttcttgcgaca |
316 |
Q |
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| T |
47192617 |
agaacatgttattgtttgaaaggttacaagttgaagaatcgtaatgattggacacaagggtgtgagcctgagtttaaacctgctgatctttcttgcgaca |
47192716 |
T |
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| Q |
317 |
gtgctcgcgttgaggatttcggttttcttcatcttcaaaacatggagttgtatggctatgatttgtatgtagcaaaagtgacaagcttgaagcaatgtca |
416 |
Q |
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| T |
47192717 |
gtgctcgcgttgaggatttcggttttcttcatcttcaaaacatggagttgtatggctatgatttgtatgtagcaaaagtgacaagcttgaagcaatgtca |
47192816 |
T |
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| Q |
417 |
aaagttgtgtttggatctttgtgaaaaatgcaaagctgttcaattcaaattcaatggtgttgctacatatgattgttttcctaagacgttgttggccaat |
516 |
Q |
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| T |
47192817 |
aaagttgtgtttggatctttgtgaaaaatgcaaagctgttcaattcaaattcaatggtgttgctacatatgattgttttcctaagacgttgttggccaat |
47192916 |
T |
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| Q |
517 |
ggaagagattctcacaatatt |
537 |
Q |
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| T |
47192917 |
ggaagagattctcacaatatt |
47192937 |
T |
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