View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1756_low_4 (Length: 549)
Name: NF1756_low_4
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1756_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 237 - 530
Target Start/End: Complemental strand, 36172661 - 36172364
Alignment:
| Q |
237 |
cttttgcaaatgatcacctattctaacttctaagcaaaacatatgaatgcatgaat----tgaatcataaagaagtcgaatgaaatggcaaaaacatgct |
332 |
Q |
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| T |
36172661 |
cttttgcaaatgattacctattctaacttctaagcaaaacatatgaatgaatgaatgaattgaatcataaagaagtcgaatgaaatggcaaaaacatgct |
36172562 |
T |
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| Q |
333 |
gcttcaacggaaaatccccaacaatagccttacacttccactcccaggtaataaacactactaataaatgtctttattctgagatgagttacttgtaaag |
432 |
Q |
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| T |
36172561 |
gcttcaacggaaaatccccgacaatagccttacacttccactcccaggtaataaacactactaataaatgtctttattctgagatgagttatttgtaaag |
36172462 |
T |
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| Q |
433 |
tgatcaaattgaattatttatatgaagaagtaaattctgatgattaatgtttactgaatctctgattaagactacgacgccgcccttggagttgcgga |
530 |
Q |
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| T |
36172461 |
tgatcaaattgaattatttatatgaagaagtaaattctgatgattaatgtttactgaatctctgattaagactaggacgccgcccttgcagttgcgga |
36172364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 36172849 - 36172627
Alignment:
| Q |
15 |
atgaatgctttatgaccgaagaagtctcattcattcacaaaagcatgcagggagagggaacgttagccacacataaattagttttctttttgacaggacc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36172849 |
atgaatgctttatgaccgaagaagtctcattcattcacaaaagcatgcagggagagggaaccttagccacacataaattagttttctttttgacaggacc |
36172750 |
T |
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| Q |
115 |
acacataattagctgaaggattgtacagagaaaatgtatgaatgaattgaacttaagtggacaaataaaaccgagtaaaaac-aacatcttttgcaaatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
36172749 |
acacataattagctgaaggattgtacagagaaaatgtatgaatgaattgaacttaagtggaccaataaaaccgagtaaaaacaaacatcttttgcaaatg |
36172650 |
T |
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| Q |
214 |
attacctattctaacttctaagc |
236 |
Q |
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||||||||||||||||||||||| |
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| T |
36172649 |
attacctattctaacttctaagc |
36172627 |
T |
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