View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1756_low_6 (Length: 429)
Name: NF1756_low_6
Description: NF1756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1756_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 142 - 421
Target Start/End: Original strand, 7499040 - 7499319
Alignment:
| Q |
142 |
gaaaggcatcaatgttggggccacattggaatccaatggcaacagaagtagcagtggtgttggaaggggaaggaatggtaagagtggtatgtggaagcaa |
241 |
Q |
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| T |
7499040 |
gaaaggcatcaatgttggggccacattggaatccaatggcaacagaagtagcagtggtgttggaaggggaaggaatggtaagagtggtatgtggaagcaa |
7499139 |
T |
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| Q |
242 |
caatgatgacaaatgcaaaaacaagaggtttagagttcagcaaggagatgtttttgtggtgcctaggtttcatccaatggctcaaatgtcatttgttaat |
341 |
Q |
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| T |
7499140 |
caatgatgacaaatgcaaaaacaagaggtttagagttcagcaaggagatgtttttgtggtgcctaggtttcatccaatggctcaaatgtcatttgttaat |
7499239 |
T |
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| Q |
342 |
cagacacttgtttttatgggattcagcactgctgcaaagaaaaatcatcctcagtttttggctggtaaagaatctgtgct |
421 |
Q |
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| T |
7499240 |
cagccacttgtttttatgggattcagcactgctgcaaagaaaaatcatcctcagtttttggctggtaaagaatctgtgct |
7499319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 7498916 - 7498968
Alignment:
| Q |
18 |
ggtcagtgaccatatcataatttcattattagttaaagttataactttatgaa |
70 |
Q |
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| T |
7498916 |
ggtcagtgaccatatcataatttcattattagttaaagttataactttatgaa |
7498968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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