View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1757-Insertion-11 (Length: 527)
Name: NF1757-Insertion-11
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757-Insertion-11 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 154 - 447
Target Start/End: Original strand, 10378551 - 10378844
Alignment:
| Q |
154 |
cgaaaaagcttagcaatgcaaaagcgaaaatgtgattgtatattgttggtaatttagtacaactttacatatccgttgaacttcaaaattgttcatatat |
253 |
Q |
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| T |
10378551 |
cgaaaaagcttagcaatgcaaaagcgaaaatgtgattgtatattgttggtaatatagtacaactttacatatccgttgaacttcaaaattgttcatatat |
10378650 |
T |
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| Q |
254 |
ttttagtttataaacttctcgctactggttaatagctttacatatgttaattatatattacaagagaaaaacgatcatttttctactctttttattacac |
353 |
Q |
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| T |
10378651 |
ttttagtttataaacttctcgctactggttaatagctttacatatcttaattatatattacaggagaaaaacgatcatttttctgctttttttattacac |
10378750 |
T |
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| Q |
354 |
taatacttgtaaattatgaacggtgttatatatgtatatataattcaaaatttaatgtctatttttttctaaattgttttaagaaccttattta |
447 |
Q |
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| T |
10378751 |
taatacttgtaaattatgaacggtgttatatatgtatatataattcaaaatttaatgtctatttttttctaaattgttttaagaaccttattta |
10378844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 478 - 527
Target Start/End: Original strand, 10378872 - 10378921
Alignment:
| Q |
478 |
aaatatagcacgtgcaacaatttttaccaccctcttttctccattgggtg |
527 |
Q |
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| T |
10378872 |
aaatatagaacgtgtaacaatttttaccaccctcttttctccatcgggtg |
10378921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 31540830 - 31540644
Alignment:
| Q |
8 |
acaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcctcaaatgtcatcattacaaacttcacatgtgtcttctagcaatttg |
107 |
Q |
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| T |
31540830 |
acaaggaccacttcagtcggtgccatatcctccaaagcctttcttatattctcctgcattgtcatcattgcaaacttcatatttgtcttccagcaatttg |
31540731 |
T |
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| Q |
108 |
ttagagaaaaactcaataccttaactgaagaatgattccataaaatcgaaaaagcttagcaatg-caaaagcgaaaatgtgattgta |
193 |
Q |
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| T |
31540730 |
ttagagacaaactcagcatcctaattgaagaatggttccataaaaccagataagttcagcaaagacaaaagtgaaaatgtgattgta |
31540644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 31532204 - 31532102
Alignment:
| Q |
8 |
acaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcctcaaatgtcatcattacaaacttcacatgtgtcttctagcaatttg |
107 |
Q |
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| T |
31532204 |
acaaggaccacttcagtcagtgccatatcctccaaagcctttcttatattctcctaaaattccatcagtacaaacttcatatgtgtcttccagcaatatg |
31532105 |
T |
|
| Q |
108 |
tta |
110 |
Q |
| |
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||| |
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| T |
31532104 |
tta |
31532102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 31573254 - 31573389
Alignment:
| Q |
8 |
acaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcctcaaatgtcatcattacaaacttcacatgtgtcttctagcaatttg |
107 |
Q |
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||||||||||||| | |||||||| || |||||||||||| | ||||||||||| ||||| |||||||||||| |||| ||| |||||| ||||||||| |
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| T |
31573254 |
acaaggaccacttgattcagtgccataccctccaaagcctattctatattctcctaaaatgccatcattacaaagttcatatgcgtcttccagcaatttg |
31573353 |
T |
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| Q |
108 |
ttagagaaaaactcaataccttaactgaagaatgat |
143 |
Q |
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| T |
31573354 |
ttagagaaaaattcaataacattactgaagaatgat |
31573389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 33305567 - 33305666
Alignment:
| Q |
9 |
caaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcctcaaatgtcatcattacaaacttcacatgtgtcttctagcaatttgt |
108 |
Q |
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| T |
33305567 |
caaggaccacttgggtcagtgccatatcccccaaaacctttcttatactctcctgaaaggccatcattacaaatttcatatgtgtcttccaacaatttgt |
33305666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 387
Target Start/End: Complemental strand, 31383650 - 31383605
Alignment:
| Q |
342 |
tttttattacactaatacttgtaaattatgaacggtgttatatatg |
387 |
Q |
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| T |
31383650 |
tttttattgcactaatacatgtaaattatgaacggtattttatatg |
31383605 |
T |
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