View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1757-Insertion-12 (Length: 665)
Name: NF1757-Insertion-12
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757-Insertion-12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 564; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 8 - 631
Target Start/End: Original strand, 1348201 - 1348824
Alignment:
| Q |
8 |
ctaatactgttagaaactcgacattataaactgctttgaacggaatatcaaataaatggattttggccttgatcaacttggataagggtctaaaatttat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1348201 |
ctaatactgttagaaactcgacattataaactgctctgaacggaatatcaaataaatggattttggccttgatcaacttggataagggtttaaaatttat |
1348300 |
T |
|
| Q |
108 |
agttttggcctttttcaacatggagtttgtcaatgctttagtatatctagttttcaaattctccaattgaggacactcagacagaagtttcatgagatcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1348301 |
agttttggcctttttcaacatggagtttgtcaatgctttagtatatctagttttcaaattctccaattgaggacacccagacagaagtttcatgagatcc |
1348400 |
T |
|
| Q |
208 |
ttcttatcttcaaaccgaacagaacacatgcaaaggattttgagcataggaagatgaaccgaacgaagaaacatggtgtttacacataaattctttaatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
1348401 |
ttcttatcttcaaaccgaacagaacacatgcaaaggattttgagcataggaagatgaaccgaactacgaaacatggtgtttacacgtaaattctttaatt |
1348500 |
T |
|
| Q |
308 |
ttagaaccacaagtgttttgcaacggaaaatggttagcgccaaagggacgtgtaacaaatttagatagagatcctcgacaccacgatgttttgctgcttt |
407 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
1348501 |
ttagaaccacaagtgttttgcaatggaaaatggttggggccaaagggacgtgtaacaagtttagatagagatccacaacaccacgatgttttgctgcttt |
1348600 |
T |
|
| Q |
408 |
tatccagtcgttaaaaccgaaacaataagtcccccagagttacgaaccacatgttagatgaaaagatttgagggtttgtagttgcgcaggtggggagagc |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1348601 |
tatccagtcgttaaaaccgaaacaataagtcccccagagtttcgaaccacatgttagatgaaaagatttgagggtttgtagttgcgcaggtggggagagc |
1348700 |
T |
|
| Q |
508 |
attacaacatccaacacttgacgaaagtgaatccaatcctttccgtttttcacttctttgtcgtcgatgtggggaatgggaagtgtgtggaataatggga |
607 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1348701 |
attacaacatccaacatttgacgaaagtgaatccaatcctttccgtttttcacttctttgtcgtcgatgtggggaatcggaagtgtgtggaataatggga |
1348800 |
T |
|
| Q |
608 |
accatctcttagaaagaatggtag |
631 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1348801 |
accatctcttagaaagaatggtag |
1348824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 19970124 - 19970231
Alignment:
| Q |
155 |
tagttttcaaattctccaattgaggacactcagacagaagtttcatgagatccttcttatcttcaaaccgaacagaacacatgcaaaggattttgagcat |
254 |
Q |
| |
|
||||||||||||||||||| |||||| | || | ||||||||||||||||||| |||||||||| | ||| ||||||| ||||| |||||||| |
|
|
| T |
19970124 |
tagttttcaaattctccaacatgggacaccccgaaaaaagtttcatgagatccttcatatcttcaaaacttacaaaacacatataaagggttttgagcga |
19970223 |
T |
|
| Q |
255 |
aggaagat |
262 |
Q |
| |
|
|||||||| |
|
|
| T |
19970224 |
aggaagat |
19970231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 19805832 - 19805774
Alignment:
| Q |
150 |
atatctagttttcaaattctccaattgaggacactcagacagaagtttcatgagatcct |
208 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| ||||||||||||| ||||| |
|
|
| T |
19805832 |
atatctagttttcaaattctccaatatgggacacccagaaagaagtttcatgaaatcct |
19805774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University