View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1757-Insertion-14 (Length: 846)
Name: NF1757-Insertion-14
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757-Insertion-14 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 534 - 846
Target Start/End: Original strand, 16819984 - 16820290
Alignment:
| Q |
534 |
ttgtttttaggaagaaaaatagcattagagctttggttgttggtgctattttagaggtagttatagatgaggatagcaatttccttactactccttttca |
633 |
Q |
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| T |
16819984 |
ttgtttttaggaagaaaaatagcattagagcttcggttgttggtgctattttagaggtagttatagatgaggatagcaatttccttactactccttttca |
16820083 |
T |
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| Q |
634 |
tatacaagagttcaaggaacccttgttttccatgcacccggacaagtgtccaggaccgaatggtttcaattatgnnnnnnnnnnnnnnnataacattttt |
733 |
Q |
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| T |
16820084 |
tacacaagagttcaaggaacccttgttttccatgca-ccggacaagtgtccaggaccgaatggtttcaattatgttttttttttta-----aacattttt |
16820177 |
T |
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| Q |
734 |
ggtctgtttgtagccctgatacatttcataaatgttacacatggttgagtaataaccaaattccttcctctctaaactttgataacattgccttgattcc |
833 |
Q |
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| T |
16820178 |
tgtctgtttgtagccctgatacatttcataaatgttacacatggttgagtaataaccaaatcccttcctctctaaactttgataacattgccttgattcc |
16820277 |
T |
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| Q |
834 |
ttaggggaatgaa |
846 |
Q |
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| T |
16820278 |
tcgggggaatgaa |
16820290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 16819547 - 16819717
Alignment:
| Q |
8 |
tttacaacttcttggaagagggagaaggtgtgcctcatgggatttcttgcataatatgtcacaaagtatttcgctcccatggtgtattatgggtgacttt |
107 |
Q |
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| T |
16819547 |
tttacaacttcttggaagagggagaaggtgtgcctcatgggatttcttgcataatatgtcacaaagtatttcgctcccatggtgtattatgggtgacttt |
16819646 |
T |
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| Q |
108 |
attgatatcatgggtgtccgtgagaaacggggtggctatgaacgttctatgtggttgataagcggtttcag |
178 |
Q |
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| T |
16819647 |
attgatatcatgggtgtccgtgagaaacggggtggctatgaacgttctatgtggttgataagcggtttcag |
16819717 |
T |
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