View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1757-Insertion-16 (Length: 696)
Name: NF1757-Insertion-16
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757-Insertion-16 |
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| [»] chr4 (7 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (6 HSPs) |
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| [»] scaffold1437 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 115 - 696
Target Start/End: Complemental strand, 32350616 - 32350035
Alignment:
| Q |
115 |
ttaaaaatttccagttaaattgcagcaaaaagatgggaggaaaaaagtaaaatagaaattaaccccatcaacatccaagtcaaagtcatttcccaagttg |
214 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32350616 |
ttaaaaatttccagttaaattgctgcaaaaagatgggaggaaaaaaataaaatagaaattaaccccatcaacatccaagtcaaagtcatttcccaagttg |
32350517 |
T |
|
| Q |
215 |
tggaagagtgttgaactgctactacactgaaaggtctcaaagaaaagtgcaatttggaactcagtgtatccaacaaaaatcgtatcttaaaggatatata |
314 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32350516 |
tggaagagtgttaaactgctactacactgaaaggtctcaaagaaaagtgcaatttggaactcagtgtatccaacaaaaatcgtatcttaaaggatatata |
32350417 |
T |
|
| Q |
315 |
agaatttcaatccaagttttggcacttaccaaacactgtcccacaataggaaaatgtcttgtaagttagtatagcatcacatttaatagcaaaagctgga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32350416 |
agaatttcaatccaagttttggcacttaccaaacactgtcccacaataggaaaatgtcttgtaagttagtatagcatcacatttaatagcaaaagctgga |
32350317 |
T |
|
| Q |
415 |
ggtgacactaacaaataaaaattgatttaaacctcaaagattaagacactttcacttataaattgaaccgtgtcctaatgcttcatacacacccttaata |
514 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32350316 |
ggtggcactaacaaataaaaattgatttaaacctcaaagattaagacactttcacttataaattgaaccgtgtcctaatgcttcatacacacccttaata |
32350217 |
T |
|
| Q |
515 |
caaaacatttcattcccatagctaccttttcccctgaacacttcaaagatggcgaattctcgcattgcaaggttcttcatggaggtggcaccaccacagt |
614 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32350216 |
caaaacatttcattcccatagctaccttttcccctaaacacttcaaagatggcgaattctcgcattgcaaggtttttcatggaggtggcaccaccacagt |
32350117 |
T |
|
| Q |
615 |
atgttagcgtgatgaggcgtagaacatcaaaggtgatggaaacaattactgaagaggatatggaaatgagctcaaatgatag |
696 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32350116 |
atgttagcgtgatgaggcgtagaacatcaatgatgatggaaacaattactgaagaggatatggaaatgagctcaaatgatag |
32350035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 563 - 693
Target Start/End: Complemental strand, 32343033 - 32342903
Alignment:
| Q |
563 |
atggcgaattctcgcattgcaaggttcttcatggaggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaaaggtgatggaaacaatta |
662 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | |
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| T |
32343033 |
atggcaaattctcgcattgcaaggtttttcatggaggtagcaccaccacagtatgttagcgtgatgaggcatagaacatcaaagatgatggaaacaatca |
32342934 |
T |
|
| Q |
663 |
ctgaagaggatatggaaatgagctcaaatga |
693 |
Q |
| |
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| ||||| |||| |||||| | ||||||||| |
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| T |
32342933 |
ccgaagatgatagggaaatcaactcaaatga |
32342903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 32350698 - 32350612
Alignment:
| Q |
8 |
gtggcaatgttggtgatgttgccatgtaaaattttgtggcctacatgtttaatacatataatttaaacatgattaaccatttcttaaa |
95 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32350698 |
gtggcaatgttggtgatgttgccatgttaaattttgtggcctacatgtttaatacatataa-ttaaacatgattaaccatttcttaaa |
32350612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 571 - 674
Target Start/End: Complemental strand, 3215453 - 3215350
Alignment:
| Q |
571 |
ttctcgcattgcaaggttcttcatggaggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaaaggtgatggaaacaattactgaagag |
670 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |||||||||||||| |||||||| |
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| T |
3215453 |
ttctcgcgttgcaaggtttttcatggaggtggcaccaccacaatatgtttctgtgatgaggcatagaacatcaaagatgatggaaacaattgctgaagag |
3215354 |
T |
|
| Q |
671 |
gata |
674 |
Q |
| |
|
|||| |
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|
| T |
3215353 |
gata |
3215350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 3215707 - 3215641
Alignment:
| Q |
395 |
atttaatagcaaaagctggaggtgacactaacaaataaaaattgatttaaacctcaaagattaagac |
461 |
Q |
| |
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|||||||||||||||||||||| | ||| | |||||||||| |||||| | |||||||||||||||| |
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| T |
3215707 |
atttaatagcaaaagctggaggcggcaccatcaaataaaaactgatttgaccctcaaagattaagac |
3215641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 367
Target Start/End: Complemental strand, 32343455 - 32343316
Alignment:
| Q |
232 |
gctactacactgaaaggtctcaaagaaaagtgcaa-tttggaactcagtgtatccaacaaaaat------cgtatcttaaaggatatataagaatttcaa |
324 |
Q |
| |
|
|||||||||| |||| || | |||||||||||||| |||||||||||||||| |||||| | |||||||||||||||||| | |||| ||| |
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| T |
32343455 |
gctactacaccgaaaagtttaaaagaaaagtgcaaatttggaactcagtgtacacaacaagaggaggagccgtatcttaaaggatata--ataatt-caa |
32343359 |
T |
|
| Q |
325 |
tccaagttttggcacttaccaaacactgtcccacaataggaaa |
367 |
Q |
| |
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|||| |||||| ||| | ||||||||||||||||||||||||| |
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| T |
32343358 |
tccaggttttgacacatgccaaacactgtcccacaataggaaa |
32343316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 391 - 461
Target Start/End: Complemental strand, 32343276 - 32343205
Alignment:
| Q |
391 |
tcacatttaatagcaaaagctggaggtgacactaacaaat-aaaaattgatttaaacctcaaagattaagac |
461 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||||| ||||| ||||| |
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|
| T |
32343276 |
tcacatttaatagcaaaagttggagccggcactaacaaatgaaaaattgatttaaacctttaagataaagac |
32343205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 571 - 696
Target Start/End: Original strand, 34011836 - 34011961
Alignment:
| Q |
571 |
ttctcgcattgcaaggttcttcatggaggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaaaggtgatggaaacaattactgaagag |
670 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |||||||||||||| |||||||| |
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|
| T |
34011836 |
ttctcgcgttgcaaggtttttcatggaggtggcaccaccacaatatgtttctgtgatgaggcatagaacatcaaagatgatggaaacaattgctgaagag |
34011935 |
T |
|
| Q |
671 |
gatatggaaatgagctcaaatgatag |
696 |
Q |
| |
|
|||| |||||| | |||| ||||||| |
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|
| T |
34011936 |
gatagggaaattaactcacatgatag |
34011961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 461
Target Start/End: Original strand, 34011577 - 34011648
Alignment:
| Q |
390 |
atcacatttaatagcaaaagctggaggtgacactaacaaataaaaattgatttaaacctcaaagattaagac |
461 |
Q |
| |
|
||||||||||||||||||| |||||| ||| | |||||||||| |||||| | |||||||||||||||| |
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|
| T |
34011577 |
atcacatttaatagcaaaaattggaggccgcaccagcaaataaaaactgatttgaccctcaaagattaagac |
34011648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 571 - 696
Target Start/End: Original strand, 33149178 - 33149303
Alignment:
| Q |
571 |
ttctcgcattgcaaggttcttcatggaggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaaaggtgatggaaacaattactgaagag |
670 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |||||||||||||| |||||||| |
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|
| T |
33149178 |
ttctcgcgttgcaaggtttttcatggaggtggcaccaccacaatatgtttctgtgatgaggcatagaacatcaaagatgatggaaacaattgctgaagag |
33149277 |
T |
|
| Q |
671 |
gatatggaaatgagctcaaatgatag |
696 |
Q |
| |
|
|||| |||||| | |||| ||||||| |
|
|
| T |
33149278 |
gatagggaaattaactcacatgatag |
33149303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 370 - 461
Target Start/End: Original strand, 33138899 - 33138990
Alignment:
| Q |
370 |
gtcttgtaagttagtatagcatcacatttaatagcaaaagctggaggtgacactaacaaataaaaattgatttaaacctcaaagattaagac |
461 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||| | |||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
33138899 |
gtcttgtaagttagtatgtcatcccatttaatagcaaaagctggaggcggcactaaaaaataaaaattgatttaatcctcaaagattaagac |
33138990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 571 - 695
Target Start/End: Original strand, 33139168 - 33139292
Alignment:
| Q |
571 |
ttctcgcattgcaaggttcttcatggaggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaaaggtgatggaaacaattactgaagag |
670 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||| |||||| || ||||||| ||| ||||||| |||||||||||||||| |||||| |
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|
| T |
33139168 |
ttctcgcattgcaagattttttatggaggtggcaccaccacaatatgtttctgttatgaggcaaagagcatcaaatatgatggaaacaattaccgaagag |
33139267 |
T |
|
| Q |
671 |
gatatggaaatgagctcaaatgata |
695 |
Q |
| |
|
|||| ||||| |||||| |||||| |
|
|
| T |
33139268 |
gatagagaaattagctcacatgata |
33139292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 569 - 659
Target Start/End: Original strand, 33142879 - 33142969
Alignment:
| Q |
569 |
aattctcgcattgcaaggttcttcatggaggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaaaggtgatggaaacaa |
659 |
Q |
| |
|
|||||||| ||| |||||| |||||| | |||||||||||||| |||||| |||||||||| |||||||||||| |||| ||||||| |
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|
| T |
33142879 |
aattctcggattataaggtttttcatgaaagtggcaccaccacaatatgtttctgtgatgaggcatagaacatcaaatatgattgaaacaa |
33142969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 461
Target Start/End: Original strand, 33148919 - 33148990
Alignment:
| Q |
390 |
atcacatttaatagcaaaagctggaggtgacactaacaaataaaaattgatttaaacctcaaagattaagac |
461 |
Q |
| |
|
||||||||||||||||||| |||||| ||| | |||||||||| |||||| | |||||||||||||||| |
|
|
| T |
33148919 |
atcacatttaatagcaaaaattggaggccgcaccagcaaataaaaactgatttgaccctcaaagattaagac |
33148990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 524
Target Start/End: Original strand, 33139034 - 33139088
Alignment:
| Q |
470 |
ttataaattgaaccgtgtcctaatgcttcatacacacccttaatacaaaacattt |
524 |
Q |
| |
|
|||||||||||||| ||| || |||||||| ||||| ||| |||||||||||||| |
|
|
| T |
33139034 |
ttataaattgaaccatgttcttatgcttcaaacacatcctcaatacaaaacattt |
33139088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1437 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: scaffold1437
Description:
Target: scaffold1437; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 571 - 681
Target Start/End: Original strand, 616 - 726
Alignment:
| Q |
571 |
ttctcgcattgcaaggttcttcatggaggtggcaccaccacagtatgttagcgtgatgaggcgtagaacatcaaaggtgatggaaacaattactgaagag |
670 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
616 |
ttctcgcgttgcaaggtttttcatggaggtggcaccaccacaatatgtttctgtgatgaggcatagaacatcaaagatgatggaaacaattgctgaagag |
715 |
T |
|
| Q |
671 |
gatatggaaat |
681 |
Q |
| |
|
|||| |||||| |
|
|
| T |
716 |
gatagggaaat |
726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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