View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1757-Insertion-17 (Length: 527)

Name: NF1757-Insertion-17
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1757-Insertion-17
NF1757-Insertion-17
[»] chr5 (15 HSPs)
chr5 (102-338)||(10101927-10102163)
chr5 (8-136)||(10101779-10101907)
chr5 (181-389)||(10213895-10214101)
chr5 (188-389)||(9661591-9661790)
chr5 (106-318)||(10101424-10101630)
chr5 (188-320)||(12110133-12110265)
chr5 (10-88)||(10211541-10211619)
chr5 (10-91)||(13855241-13855322)
chr5 (10-88)||(9684411-9684489)
chr5 (265-309)||(9659849-9659893)
chr5 (452-500)||(9676960-9677008)
chr5 (198-249)||(14816398-14816449)
chr5 (452-486)||(10213818-10213852)
chr5 (106-163)||(9678379-9678436)
chr5 (348-389)||(12110075-12110116)
[»] chr4 (1 HSPs)
chr4 (191-234)||(8472547-8472590)
[»] chr2 (1 HSPs)
chr2 (186-231)||(6774724-6774769)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 102 - 338
Target Start/End: Original strand, 10101927 - 10102163
Alignment:
Q  102 tttaagtggtagttagcagcagttaacactttagtgcatgtttaaattgacgatgaactaggcgagtgaagtcacggcgagccattgtgattttggcaaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10101927 tttaagtggtagttagcagcagttaacactttagtgcatgtttaaattgacgatgaactaggcgagtgaaatcacggcgagccattgtgattttggcaaa 10102026  T
Q  202 agctacacttcgtagcatcaacaacatcacagttccaccgttatttcgacaaattcaccgtgattcaagttatcgtatgaagtttttcattaaaagttac 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10102027 agctacacttcgtagcatcaacaacatcacagttccaccgttatttcgacaaattcaccgtgatttaagttatcgtatgaagtttttcattaaaagttac 10102126  T
Q  302 atgcttttaaaaatattatacttatcgccttagaata 338  Q
    |||||||||||||||||||||||||||||||||||||    
T  10102127 atgcttttaaaaatattatacttatcgccttagaata 10102163  T

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Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 10101779 - 10101907
Alignment:
Q  8 attttgtatactctgtatgcttaagcattctggcggggagctgtatatatttttctctgagaaatttaaatcgatcaccttgttcatctttcactttaag 107  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10101779 attttgtatactctatatgcttaagcattctggcggggagctgtatatatttttctctgagaaagttaaatcgatcaccttgttcatctttcactttaag 10101878  T
Q  108 tggtagttagcagcagttaacactttagt 136  Q
    |||||||||||||||| ||||||||||||    
T  10101879 tggtagttagcagcagctaacactttagt 10101907  T

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Target: chr5; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 181 - 389
Target Start/End: Complemental strand, 10214101 - 10213895
Alignment:
Q  181 agccattgtgattttggcaaaagctacacttcgtagcatcaacaacatcacagttccaccgttatttcgacaaattcaccgtgattcaagttatcgtatg 280  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||| ||||||| | | ||||||| ||| ||||||||||||||||    
T  10214101 agccattgtgattttggcaaaagctacactttgtagcatcaacaacatcacggtgccacagttattttgtcgaattcactgtggttcaagttatcgtatg 10214002  T
Q  281 aagtttttcattaaaagttacatgcttttaaaaatattatacttatcgccttagaatagttcttctcagaataggagtttcactttcaccatccatcaat 380  Q
    ||| ||||||||||||||||||||||||| |||||||  | ||| || |||||||| ||||||  | ||||||  |||| ||||||||||||||||||||    
T  10214001 aaggttttcattaaaagttacatgcttttcaaaatat--tgcttttcaccttagaagagttctgtttagaataaaagttacactttcaccatccatcaat 10213904  T
Q  381 tatagtgac 389  Q
     ||||||||    
T  10213903 aatagtgac 10213895  T

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Target: chr5; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 188 - 389
Target Start/End: Complemental strand, 9661790 - 9661591
Alignment:
Q  188 gtgattttggcaaaagctacacttcgtagcatcaacaacatcacagttccaccgttatttcgacaaattcaccgtgattcaagttatcgtatgaagtttt 287  Q
    ||||||||||||||| | ||||||  ||| |||||||||||||| || ||||| || ||||| ||||||||||||||||||||||||||||||||| |||    
T  9661790 gtgattttggcaaaaaccacactttatagaatcaacaacatcacggtgccacctttgtttcgtcaaattcaccgtgattcaagttatcgtatgaaggttt 9661691  T
Q  288 tcattaaaagttacatgcttttaaaaatattatacttatcgccttagaatagttcttctcagaataggagtttcactttcaccatccatcaattatagtg 387  Q
    ||| |||||||| ||||||||| |||||||  ||||| || |||||| | |||| | || |||||| ||||| ||||||||| |||||||||||||||||    
T  9661690 tcaataaaagttgcatgctttttaaaatat--tacttttcaccttaggagagttatgcttagaatacgagttacactttcactatccatcaattatagtg 9661593  T

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Target: chr5; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 106 - 318
Target Start/End: Original strand, 10101424 - 10101630
Alignment:
Q  106 agtggtagttagcagcagttaacactttagtgcatgtttaaattgacgatgaactaggcgagtgaagtcacggcgagccattgtgattttggcaaaagct 205  Q
    |||||| ||||||||||| ||| |||||||||  ||||| |||  |||||||| ||||| |    | ||||||| |||||||||||| ||||||||||||    
T  10101424 agtggttgttagcagcagataatactttagtgtgtgtttgaatcaacgatgaattaggcaa----aatcacggcaagccattgtgatcttggcaaaagct 10101519  T
Q  206 acacttcgtagcatcaacaacatcacagttccaccgttatttcgacaaattcaccgtgattcaagttatcgtatgaagtttttcattaaaagttacatgc 305  Q
    |||||| ||||||| ||||||||||| || ||| |||||||||| ||||||||| || ||||| ||||| |||||||| ||||||||||||||| |||||    
T  10101520 acactttgtagcat-aacaacatcacggtgccatcgttatttcgtcaaattcactgt-attcatgttattgtatgaaggttttcattaaaagttgcatgc 10101617  T
Q  306 ttttaaaaatatt 318  Q
    |||| ||| ||||    
T  10101618 tttttaaagtatt 10101630  T

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Target: chr5; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 188 - 320
Target Start/End: Complemental strand, 12110265 - 12110133
Alignment:
Q  188 gtgattttggcaaaagctacacttcgtagcatcaacaacatcacagttccaccgttatttcgacaaattcaccgtgattcaagttatcgtatgaagtttt 287  Q
    ||||||||| ||||| || ||||| |||| ||||||||||||||||| ||||| || |||||  ||||||||||||||||||||||  |||||||| |||    
T  12110265 gtgattttgacaaaaacttcactttgtagaatcaacaacatcacagtgccacctttgtttcgttaaattcaccgtgattcaagttactgtatgaaggttt 12110166  T
Q  288 tcattaaaagttacatgcttttaaaaatattat 320  Q
    ||| |||||||| ||||||||| ||||||||||    
T  12110165 tcaataaaagttgcatgctttttaaaatattat 12110133  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 10211619 - 10211541
Alignment:
Q  10 tttgtatactctgtatgcttaagcattctggcggggagctgtatatatttttctctgagaaatttaaatcgatcacctt 88  Q
    ||||||||||  |||||||||||||||||||||||| | ||||||||||||||| ||| ||  ||||||||||||||||    
T  10211619 tttgtatacttggtatgcttaagcattctggcggggcgttgtatatatttttctttgaaaaggttaaatcgatcacctt 10211541  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 13855241 - 13855322
Alignment:
Q  10 tttgtatactctgtatgcttaagcattctggcggggagctgtatatatttttctctgagaaatttaaatcgatcaccttgtt 91  Q
    |||||||||| ||||||||||||||||||||||||| | ||||||||||||||  | | ||| ||||||| || ||||||||    
T  13855241 tttgtatactgtgtatgcttaagcattctggcggggcgttgtatatatttttcgttaaaaaagttaaatcaataaccttgtt 13855322  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 9684489 - 9684411
Alignment:
Q  10 tttgtatactctgtatgcttaagcattctggcggggagctgtatatatttttctctgagaaatttaaatcgatcacctt 88  Q
    ||||||| | |||||||||||| || ||||| |||| | ||||||||||||||| ||| ||| ||||||||||||||||    
T  9684489 tttgtatgcgctgtatgcttaaacaatctggtggggtgttgtatatatttttctttgaaaaagttaaatcgatcacctt 9684411  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 9659893 - 9659849
Alignment:
Q  265 ttcaagttatcgtatgaagtttttcattaaaagttacatgctttt 309  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||    
T  9659893 ttcaagttatcgtatgaagattttcattaaaagttgcatgctttt 9659849  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 500
Target Start/End: Complemental strand, 9677008 - 9676960
Alignment:
Q  452 ttgttacaatagataaaagatgaaccataccacaacttataaaggggta 500  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||||||    
T  9677008 ttgttacaatagataaaaggtaaaccataccaccacttataaaggggta 9676960  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 14816398 - 14816449
Alignment:
Q  198 caaaagctacacttcgtagcatcaacaacatcacagttccaccgttatttcg 249  Q
    |||||||||||||||| ||| ||||||| ||||| |||||||||| ||||||    
T  14816398 caaaagctacacttcggagcttcaacaaaatcacggttccaccgtgatttcg 14816449  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 486
Target Start/End: Complemental strand, 10213852 - 10213818
Alignment:
Q  452 ttgttacaatagataaaagatgaaccataccacaa 486  Q
    ||||||||||||||||||||| |||||||||||||    
T  10213852 ttgttacaatagataaaagataaaccataccacaa 10213818  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 9678436 - 9678379
Alignment:
Q  106 agtggtagttagcagcagttaacactttagtgcatgtttaaattgacgatgaactagg 163  Q
    |||||||||||||||  | ||| |||||||||||||||| |||||||  |||||||||    
T  9678436 agtggtagttagcagtggctaatactttagtgcatgtttgaattgacactgaactagg 9678379  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 12110116 - 12110075
Alignment:
Q  348 agaataggagtttcactttcaccatccatcaattatagtgac 389  Q
    |||||| ||||| ||||||||| |||||||||||||||||||    
T  12110116 agaataagagttacactttcactatccatcaattatagtgac 12110075  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 8472547 - 8472590
Alignment:
Q  191 attttggcaaaagctacacttcgtagcatcaacaacatcacagt 234  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||    
T  8472547 attttggcaaaagctacactttgtagcttcaacaaaatcacagt 8472590  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 6774769 - 6774724
Alignment:
Q  186 ttgtgattttggcaaaagctacacttcgtagcatcaacaacatcac 231  Q
    |||||||||| ||||||||||||||||| ||| ||||||| |||||    
T  6774769 ttgtgattttagcaaaagctacacttcggagcttcaacaaaatcac 6774724  T

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