View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1757-Insertion-18 (Length: 758)
Name: NF1757-Insertion-18
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757-Insertion-18 |
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Alignment Details
Target: chr7 (Bit Score: 525; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 10 - 756
Target Start/End: Original strand, 25323621 - 25324375
Alignment:
| Q |
10 |
ttggtacttattccctgaaaaattattttacatattcaatttttatttgaatgaaaagtagtataaaaaattctttattgaaaattaagatgctttgtat |
109 |
Q |
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| T |
25323621 |
ttggtacttattccctgaaaaattattttatatattcaatttttgtttgaatgaaaagtagtataaaa-attctttattgaaaattaagatgctttgtat |
25323719 |
T |
|
| Q |
110 |
atgtaagcagagaacaataccatttccagcatgggagaaggtatcccaaatgcttggcttcctgccatcttgatttgctgcaccctcaacctttcacagc |
209 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
25323720 |
atgtgagcagataacaataccatttccagcatgggagaaggtatcccaaatgcttggcttcctgccatctttatttgctgcaccctcaacctttcacaac |
25323819 |
T |
|
| Q |
210 |
accggaaatccagtatatatttcaatcttaattccaactattaccattgtatgacaaagattaagattccatttgttctataaggaaaaattaagattct |
309 |
Q |
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| T |
25323820 |
accgaaaatccaatatatatttcaatcttaattccaactattaccattgtatgacaaagattaagattccatttgttctataaaaaaaaattaagattct |
25323919 |
T |
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| Q |
310 |
attggtttaagataaaattctaatatatactaaaagcttaagacttgagaaaaccttatataggtctagaaaatcaagattgttcaa--tannnnnnnnn |
407 |
Q |
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| T |
25323920 |
attggtttaagataaaattctaatatatactaaaagcttaagacttgagaaaaccttatataggtctagaaaatcaagattgttcaaattatttatttat |
25324019 |
T |
|
| Q |
408 |
nnnnnnaaagtgaagttggtggttacttttttagggagaagggaatttattagaagcatgggtttgaattctacacctctttcataaaatttatttagca |
507 |
Q |
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| T |
25324020 |
ttttttaaagtgaggttggtggttacttttttagggagaagggaatttattagaagcatgggtttgaactctacccctc-ttcataaaatttatttagca |
25324118 |
T |
|
| Q |
508 |
tcctaactcatacaccttaaaggaccaaagattaaatcttaatttcagactatatcttaattccgacaattatctttgtatgaagaagatttaacagtcc |
607 |
Q |
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| T |
25324119 |
tcctaactcatacaccttaaaggaccaaagattaaatcttaatttcagactaaatcttaattccgaaaattatctttgtatgaagaagatttaacagtcc |
25324218 |
T |
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| Q |
608 |
gtttaattatatccacttgagttggtccgatgatcttagcttgagactttagagtatgcttctctcaaaatcttagatgtcgattttga-----taagtc |
702 |
Q |
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| T |
25324219 |
gtttaattatacccacttgagttgattcgatggtcttagtttgagactttagagtatgctcctctcaaagtcttaggtgtcgatttcgatggcttaagtc |
25324318 |
T |
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| Q |
703 |
gacttctt---nnnnnnnnnntccatttatttaagataaaaagtattaattttaaaa |
756 |
Q |
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| T |
25324319 |
gacttcttaaaaaaaaaaaagtccatttatttaagataaaaagtattaattttaaaa |
25324375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 25329899 - 25329981
Alignment:
| Q |
123 |
acaataccatttccagcatgggagaaggtatcccaaatgcttggcttcctgccatcttgatttgctgcaccctcaacctttca |
205 |
Q |
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| T |
25329899 |
acaataccatttccaccatgggcaaaggtatcccatatgcttggtttcctgccatcttcatttgctgcaccttcaaactttca |
25329981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 9988952 - 9988872
Alignment:
| Q |
123 |
acaataccatttccagcatgggagaaggtatcccaaatgcttggcttcctgccatcttgatttgctgcaccctcaaccttt |
203 |
Q |
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| T |
9988952 |
acaataccatttccaccacgggcaaaggtatcccatatgcttggtttcctaccgtcttcatttgatgcaccttcaaacttt |
9988872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 14331985 - 14331905
Alignment:
| Q |
123 |
acaataccatttccagcatgggagaaggtatcccaaatgcttggcttcctgccatcttgatttgctgcaccctcaaccttt |
203 |
Q |
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||||||||||||||| |||||| ||||||||||| |||||||| ||||| ||||||| |||||||||||| |||| |||| |
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| T |
14331985 |
acaataccatttccaccatgggcaaaggtatcccatatgcttggtttcctaccatcttcatttgctgcaccttcaaacttt |
14331905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 667
Target Start/End: Original strand, 26061691 - 26061738
Alignment:
| Q |
620 |
ccacttgagttggtccgatgatcttagcttgagactttagagtatgct |
667 |
Q |
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| T |
26061691 |
ccacatgagttggtctgatgatattagcttgagacttgagagtatgct |
26061738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 5220877 - 5220955
Alignment:
| Q |
127 |
taccatttccagcatgggagaaggtatcccaaatgcttggcttcctgccatcttgatttgctgcaccctcaacctttca |
205 |
Q |
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||||||| |||||||| | ||||||||||| ||||||| |||||||||||||| |||||||||||| || |||||||| |
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| T |
5220877 |
taccattgccagcatgtgcaaaggtatcccatatgcttgccttcctgccatcttcatttgctgcaccttctacctttca |
5220955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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