View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1757-Insertion-20 (Length: 872)

Name: NF1757-Insertion-20
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1757-Insertion-20
NF1757-Insertion-20
[»] chr6 (3 HSPs)
chr6 (8-410)||(5577655-5578053)
chr6 (654-872)||(5576629-5576851)
chr6 (459-546)||(5576851-5576935)


Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 410
Target Start/End: Complemental strand, 5578053 - 5577655
Alignment:
Q  8 attttggttcaattgggtggacactattgttgttgtcctttcaactttgcagttacttgtgtcatgtactaaactctctgaatgtgttgcagaggtaata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5578053 attttggttcaattgggtggacactattgttgttgtcctttcaactttgcagttacttgtgtcatgtactaaactctctgaatgtgttgcagaggtaata 5577954  T
Q  108 actgtaacattgatctgtgtgtcacatactagttgtttgcactagtggtaattactagttcttgtacccttgtctgnnnnnnngggagacatatgagtca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  5577953 actgtaacattgatctgtgtgtcacatactagttgtttgcactagtggtaattactagttcttgtacccttgtctgtttttttgggagacatatgagtca 5577854  T
Q  208 tagccactcagcttatttgaatattgcaatatggtgtgtgagtgagttattttacccctcaccgacacaagtgtagtggtgattattttagggaacaaaa 307  Q
    ||| |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5577853 tagtcactcagcttatttgaatattgcaatatggtgt----gtgagttattttacccctcaccgacacaagtgtagtggtgattattttagggaacaaaa 5577758  T
Q  308 ccagtactagaagtacactacttaaggaaaaaggttcagatagttttacctttttctttttgcatattaatgtggtaattaaaaatccatggtttgcatg 407  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5577757 ccagtactagaagtacactacttaaggaaaaaagttcagataattttacctttttctttttgcatattaatgtggtaattaaaaatccatggtttgcatg 5577658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 654 - 872
Target Start/End: Complemental strand, 5576851 - 5576629
Alignment:
Q  654 aaccttaagcacatgaaaccttgctaaacattcaatagctcgtgagagaagcaagcacatagaaaccaaatttcactttctagaggatcatgtgaacaa- 752  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5576851 aaccttaagcacatgaaaccttgctaaatattcaatagctcgtgggagaagcaagcacatagaaaccaaatttcactttctagaggatcatgtgaacaag 5576752  T
Q  753 gtcaagatcattctaacctactgca-gacaagtgatcaagctgcacgtgttctaaccaacccctttaagatnnnnnnnttcaaggatatatgctaaatat 851  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  5576751 gtcaagatcattctaacctactgcaggacaagtgatcaagctgcacgtgttctaaccaacccctttaagataaaaaaattcaaggatatatgctaaatat 5576652  T
Q  852 gttc-acctagag-atatgaatt 872  Q
    |||| |||||||| |||||||||    
T  5576651 gttcaacctagagaatatgaatt 5576629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 459 - 546
Target Start/End: Complemental strand, 5576935 - 5576851
Alignment:
Q  459 acaagttgctattgttttgcactacgaagcaaaatttgaaaagatattcattttctgc-atccgtaatatattgacaaacatcgattga 546  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    |||||||||||||||||||    
T  5576935 acaagttgctattgttttgcactacgaagcaaaattcgaaaagatattcattttctgcgatccgta----attgacaaacatcgattga 5576851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University