View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1757-Insertion-21 (Length: 332)

Name: NF1757-Insertion-21
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1757-Insertion-21
NF1757-Insertion-21
[»] chr4 (1 HSPs)
chr4 (169-332)||(24038459-24038626)
[»] chr3 (1 HSPs)
chr3 (57-108)||(12919508-12919559)
[»] chr8 (1 HSPs)
chr8 (47-105)||(11078536-11078594)
[»] chr2 (1 HSPs)
chr2 (70-105)||(9607073-9607108)
[»] chr7 (3 HSPs)
chr7 (70-108)||(5682623-5682661)
chr7 (70-108)||(5707673-5707711)
chr7 (55-100)||(7250938-7250983)
[»] chr1 (1 HSPs)
chr1 (74-111)||(27974528-27974565)
[»] scaffold0370 (2 HSPs)
scaffold0370 (46-102)||(9353-9409)
scaffold0370 (46-102)||(14643-14699)
[»] chr5 (1 HSPs)
chr5 (57-105)||(17163045-17163093)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 169 - 332
Target Start/End: Complemental strand, 24038626 - 24038459
Alignment:
Q  169 tccaaatgcgttcaatcaaccttttcttcaagaggcggtc----tctcttcccccctccctggatgggacacttcagcctgccatgtgtatcgcgcggct 264  Q
    ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24038626 tccaaatgcgttcaatcaaccttttcttcaagaggcggtcggtctctcttcccccctccctggatgggacacttcagcctgccatgtgtatcgcgctgct 24038527  T
Q  265 aattagcgtgctgatctattagcaaatctcagacactcttccttacattttaattgtattgtgtttga 332  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24038526 aattagcgtgctgacctatttgcaaatctcagacactcttccttacattttaattgtattgtgtttga 24038459  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 12919508 - 12919559
Alignment:
Q  57 ctatttgtcgaactcggctaacatgataattagttttaggtgtaaacaatat 108  Q
    ||||||| |||| |||||||||| |||||||| |||||||||||||||||||    
T  12919508 ctatttgccgaattcggctaacaagataattatttttaggtgtaaacaatat 12919559  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 11078536 - 11078594
Alignment:
Q  47 gtttaatggcctatttgtcgaactcggctaacatgataattagttttaggtgtaaacaa 105  Q
    ||||||| | |||||| ||||| |||||||||| |||||||| ||||||||||||||||    
T  11078536 gtttaatcgtctatttatcgaaatcggctaacaagataattacttttaggtgtaaacaa 11078594  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 9607073 - 9607108
Alignment:
Q  70 tcggctaacatgataattagttttaggtgtaaacaa 105  Q
    ||||||||||||||||||| ||||||||||||||||    
T  9607073 tcggctaacatgataattatttttaggtgtaaacaa 9607108  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 5682661 - 5682623
Alignment:
Q  70 tcggctaacatgataattagttttaggtgtaaacaatat 108  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  5682661 tcggctaacatgataattatttttatgtgtaaacaatat 5682623  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 5707711 - 5707673
Alignment:
Q  70 tcggctaacatgataattagttttaggtgtaaacaatat 108  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  5707711 tcggctaacatgataattatttttatgtgtaaacaatat 5707673  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 7250938 - 7250983
Alignment:
Q  55 gcctatttgtcgaactcggctaacatgataattagttttaggtgta 100  Q
    ||||||||| | || ||||||||||||||||||| |||||||||||    
T  7250938 gcctatttgcctaattcggctaacatgataattatttttaggtgta 7250983  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 27974528 - 27974565
Alignment:
Q  74 ctaacatgataattagttttaggtgtaaacaatatcaa 111  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  27974528 ctaacatgataattatttttaggtgtaaacaaaatcaa 27974565  T

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Target: scaffold0370 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 9353 - 9409
Alignment:
Q  46 tgtttaatggcctatttgtcgaactcggctaacatgataattagttttaggtgtaaa 102  Q
    |||||||| | | ||||||| ||||| | |||||||||||||| |||||||||||||    
T  9353 tgtttaattgtccatttgtcaaactcagttaacatgataattatttttaggtgtaaa 9409  T

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Target: scaffold0370; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 14643 - 14699
Alignment:
Q  46 tgtttaatggcctatttgtcgaactcggctaacatgataattagttttaggtgtaaa 102  Q
    |||||||| | | ||||||| ||||| | |||||||||||||| |||||||||||||    
T  14643 tgtttaattgtccatttgtcaaactcagttaacatgataattatttttaggtgtaaa 14699  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 17163093 - 17163045
Alignment:
Q  57 ctatttgtcgaactcggctaacatgataattagttttaggtgtaaacaa 105  Q
    ||||||| |||  ||||||||||||||||||| |||||| |||||||||    
T  17163093 ctatttgccgagttcggctaacatgataattatttttagatgtaaacaa 17163045  T

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