View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1757-Insertion-22 (Length: 433)
Name: NF1757-Insertion-22
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757-Insertion-22 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 161 - 428
Target Start/End: Original strand, 41189004 - 41189271
Alignment:
| Q |
161 |
gaaaaagttaaagggtggattatataattatatacttatctcatattttcattgatggcgtaagtaccgttaattttttataatgtaatcttatctttat |
260 |
Q |
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| T |
41189004 |
gaaaaagttaaagggtggattatataattatatacttatctcatattttcattgatggcgtaagtaccgttaattttttataatgtaatcttatctttat |
41189103 |
T |
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| Q |
261 |
cttaaaagacttcatagcatcactcaccaccacaaacatatatagtgtgttagtataaacccagacaaatgatgcaacattccactttacatatatatct |
360 |
Q |
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| T |
41189104 |
cttaaaagacttcatagcatcactcaccaccacaaacatatatagtgtgttagtataaacccagacaaatgatgcaacattccactttacatatatatct |
41189203 |
T |
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| Q |
361 |
acttatcatgttaattgtggttcacaaaactgtcctcaatttcatagtatttgttggtagcactgtct |
428 |
Q |
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| T |
41189204 |
acttatcatgttaattgtggttcacaaaactgtcctcaatttcatagtatttgtttgtagcactgtct |
41189271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 41188651 - 41188762
Alignment:
| Q |
8 |
taggttgctaggactcttacaatgagtgacaactgtttaaccttgaggcaactagtgcaaccgttataaattatgggttggaatttaagggattaaatta |
107 |
Q |
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| T |
41188651 |
taggttgctaggactcttaaaatgagtgacaactgtttaaccttgaggcaactagtgcaaccgttataaattatgggttggaatttaagggattaaatta |
41188750 |
T |
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| Q |
108 |
tactcctatata |
119 |
Q |
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| T |
41188751 |
tactcctatata |
41188762 |
T |
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