View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1757-Insertion-24 (Length: 277)
Name: NF1757-Insertion-24
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757-Insertion-24 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 1513775 - 1513501
Alignment:
| Q |
8 |
aactggatttcgatctagtatgtttttaccacattttgttactactcattataatacccgtttagggatgatgtatacgtggnnnnnnnnnnnnn----- |
102 |
Q |
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| T |
1513775 |
aactggatttcggtctagtatgtttttaccatattttgttactactcgttgtaatacccgtttagggatgatgtatacgtggtttttttttttttttttt |
1513676 |
T |
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| Q |
103 |
ggttacagatttatacgtggttgctagtcaggttaatgtcctccaactttttgtttatttaatatattttctttgcttaaaaacaaattgtctagaatct |
202 |
Q |
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| T |
1513675 |
ggttacagatgtatacgtggttgctagtcaggttaatgtcctccaactttttgtttatttaatatattttctttgcttaaaaacaaattgcctagaatct |
1513576 |
T |
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| Q |
203 |
atcagacgggtgggtcaagaacccaaatccatttttctttctcattattttggtgagatggaagatttttaggag |
277 |
Q |
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| T |
1513575 |
atcagacgggtgggtcaagaacccaaatccatttttctttctcattattttggtgagatggaagatttttaggag |
1513501 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 30827143 - 30827097
Alignment:
| Q |
7 |
aaactggatttcgatctagtatgtttttaccacattttgttactact |
53 |
Q |
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| T |
30827143 |
aaactggatttcgatctagtacgtctttaccatattttgttagtact |
30827097 |
T |
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