View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1757-Insertion-25 (Length: 266)
Name: NF1757-Insertion-25
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757-Insertion-25 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 6407248 - 6407504
Alignment:
| Q |
10 |
cttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgtactgtagcacgatcatcaaccgaggctgaataccgtgttgtagccactg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
6407248 |
cttatcttttttggaggtaatcctatttcttggctatcacaaaaacaacgtactgtagcacgatcatcaactgaggctgaataccgtgctgtagccacta |
6407347 |
T |
|
| Q |
110 |
catctgttgaactcatgtggcttcaaaatttgcttcaagagcttcatataccattgtcgaaaccacctctattattatgtgacaatgtaggtgctacata |
209 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6407348 |
catctgctgaactcatgtggcttcaaaatttgcttcaagagcttcatataccattgtcgaaaccacctctattattatgtgacaatgtaggtgctacata |
6407447 |
T |
|
| Q |
210 |
tctctgctcaaacccagttctacattcaaaaatgaaacatatagccatggattatca |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6407448 |
tctctgctcaaacccagttctacattcaaaaatgaaacatatagccatggattatca |
6407504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 56 - 266
Target Start/End: Complemental strand, 40094636 - 40094426
Alignment:
| Q |
56 |
aacgtactgtagcacgatcatcaaccgaggctgaataccgtgttgtagccactgcatctgttgaactcatgtggcttcaaaatttgcttcaagagcttca |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40094636 |
aacgtactgtagcacgatcatcaaccgaggctgaataccgtgctgtagccactgcatctgctgaactcacgtggcttcaaaatttgcttcaagagcttca |
40094537 |
T |
|
| Q |
156 |
tataccattgtcgaaaccacctctattattatgtgacaatgtaggtgctacatatctctgctcaaacccagttctacattcaaaaatgaaacatatagcc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40094536 |
tataccattgtcgaaaccacctctattattatgtgacaatgtaggtgctacatgtctctgctcaaacccagttctacattcaaaaatgaaacatatagcc |
40094437 |
T |
|
| Q |
256 |
atggattatca |
266 |
Q |
| |
|
||||||||||| |
|
|
| T |
40094436 |
atggattatca |
40094426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 40112985 - 40112935
Alignment:
| Q |
10 |
cttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgt |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40112985 |
cttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgt |
40112935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 2662766 - 2662848
Alignment:
| Q |
184 |
ttatgtgacaatgtaggtgctacatatctctgctcaaacccagttctacattcaaaaatgaaacatatagccatggattatca |
266 |
Q |
| |
|
|||||||| ||||||||||| | |||||| ||||| || |||||||| || || ||||||||||| ||| || |||| ||||| |
|
|
| T |
2662766 |
ttatgtgataatgtaggtgccatatatctatgctctaatccagttctccactccaaaatgaaacacatatccttggactatca |
2662848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 9004626 - 9004544
Alignment:
| Q |
184 |
ttatgtgacaatgtaggtgctacatatctctgctcaaacccagttctacattcaaaaatgaaacatatagccatggattatca |
266 |
Q |
| |
|
|||||||| ||||| || ||||| ||| | || || || ||| |||||||||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
9004626 |
ttatgtgataatgtcggagctacctatgtttgttctaatccaattctacattcaagaatgaaacatatatccatggactatca |
9004544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 654083 - 653990
Alignment:
| Q |
37 |
tcttggctatcacgaaaacaacgtactgtagcacgatcatcaaccgaggctgaataccgtgttgtagccactgcatctgttgaactcatgtggct |
131 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||||| || ||||| |||||||||||||||| || ||||||||| ||| |||||| ||||||| |
|
|
| T |
654083 |
tcttggttatcacgcaaacaacgcactgtagcacg-tcttcaactgaggctgaataccgtgcagtggccactgcaactgctgaactagtgtggct |
653990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 3690501 - 3690402
Alignment:
| Q |
11 |
ttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgtactgtagcacgatcatcaaccgaggctgaataccgtgttgtagccactgc |
110 |
Q |
| |
|
|||| |||||||| ||||||||||| || ||||| ||| | ||||||||||| || ||||||||||| || ||||| ||||| |||| || |||||||| |
|
|
| T |
3690501 |
ttatattttttggtggtaatcctatctcatggctctcaaggaaacaacgtaccgtggcacgatcatccactgaggcagaatatcgtgcagttgccactgc |
3690402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 3690331 - 3690246
Alignment:
| Q |
181 |
ttattatgtgacaatgtaggtgctacatatctctgctcaaacccagttctacattcaaaaatgaaacatatagccatggattatca |
266 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||| ||| | || || |||| |||||| || ||| | |||||||||| |
|
|
| T |
3690331 |
ttattgtgtgacaatgtaggtgcaacatatctttgctcaaatccaatacttcactcaagaatgaagcacatatcattggattatca |
3690246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 3019833 - 3019915
Alignment:
| Q |
184 |
ttatgtgacaatgtaggtgctacatatctctgctcaaacccagttctacattcaaaaatgaaacatatagccatggattatca |
266 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||| || |||||||| || || ||||||||||| ||| || |||| ||||| |
|
|
| T |
3019833 |
ttatgtgataatgtaggtgccacatatctatgctctaatccagttctccactccaaaatgaaacacatatccttggactatca |
3019915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 32074086 - 32074185
Alignment:
| Q |
11 |
ttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgtactgtagcacgatcatcaaccgaggctgaataccgtgttgtagccactgc |
110 |
Q |
| |
|
|||| |||||||| ||||||||||| || ||||| ||| | ||||||||||| || ||||||||||| | ||||| ||||| |||| || |||||||| |
|
|
| T |
32074086 |
ttatattttttggtggtaatcctatctcatggctctcaaggaaacaacgtaccgtggcacgatcatccattgaggcagaatatcgtgcagttgccactgc |
32074185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 3019667 - 3019741
Alignment:
| Q |
18 |
ttttggaggtaatcctatttcttggctatcacgaaaacaacgtactgtagcacgatcatcaaccgaggctgaata |
92 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | |||||||| || || || | ||||| || ||||||||||| |
|
|
| T |
3019667 |
ttttggaggtaatcctatttcttggctctcaaggaaacaacgcaccgttgctaggtcatccactgaggctgaata |
3019741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 32074256 - 32074341
Alignment:
| Q |
181 |
ttattatgtgacaatgtaggtgctacatatctctgctcaaacccagttctacattcaaaaatgaaacatatagccatggattatca |
266 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||| ||| | || || |||| |||||| || ||| | |||||||||| |
|
|
| T |
32074256 |
ttattgtgtgacaatgtaggtgcaacatatctttgctcaaatccaatacttcactcaagaatgaagcacatatcattggattatca |
32074341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 28083494 - 28083395
Alignment:
| Q |
11 |
ttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgtactgtagcacgatcatcaaccgaggctgaataccgtgttgtagccactgc |
110 |
Q |
| |
|
|||| |||||||| ||||||||||| || ||||| ||| | ||||||||||| || ||||||||||| | ||||| ||||| |||| || |||||||| |
|
|
| T |
28083494 |
ttatattttttggtggtaatcctatctcatggctctcaaggaaacaacgtaccgtggcacgatcatccaatgaggcagaatatcgtgcagttgccactgc |
28083395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 1108962 - 1108880
Alignment:
| Q |
184 |
ttatgtgacaatgtaggtgctacatatctctgctcaaacccagttctacattcaaaaatgaaacatatagccatggattatca |
266 |
Q |
| |
|
|||||||| ||||| || ||||| ||| | || || || ||| |||||||||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
1108962 |
ttatgtgataatgttggagctacctatgtttgttctaatccaattctacattcaagaatgaaacatatatccatggactatca |
1108880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 28083324 - 28083239
Alignment:
| Q |
181 |
ttattatgtgacaatgtaggtgctacatatctctgctcaaacccagttctacattcaaaaatgaaacatatagccatggattatca |
266 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||| ||| | || || |||| |||||| || ||| | |||||||||| |
|
|
| T |
28083324 |
ttattgtgtgacaatgtaggtgcaacatatctttgctcaaatccaatacttcactcaagaatgaagcacatatcattggattatca |
28083239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University