View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1757-Insertion-27 (Length: 623)
Name: NF1757-Insertion-27
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757-Insertion-27 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 4e-92; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 316 - 572
Target Start/End: Complemental strand, 54270546 - 54270292
Alignment:
| Q |
316 |
aattaattataattttgaataccattaaccataattttagacgtgattaaatagtannnnnnnnnnnnnnnnnaagtattgtttgagtgtgaattaatac |
415 |
Q |
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| T |
54270546 |
aattaattataattttgaataccattaaccataattttagacgtgtttaaatagtacttttatttttctttttaagtattgtttgagtgtgaattaata- |
54270448 |
T |
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| Q |
416 |
ttatttaagtgggttttcacagtttatgtttaaatagtttctactttttgagttgtaggcccatccatgctcaggtgtctacttata--cccgttcacct |
513 |
Q |
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| T |
54270447 |
---tttaagtgggttttcacagtttatgtttaaatagtttctactttttgagttgtaggcccatccgtgctcaggtgtctacttatacccccgttcacct |
54270351 |
T |
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| Q |
514 |
cacctgttatcacgttcatcatagctcctcctcgttttcagtttcagaaatatacttcg |
572 |
Q |
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| T |
54270350 |
cacctgttatcacgttcatcatagctcctcctcgttttcagtttcagaaatatacttcg |
54270292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 54271630 - 54271463
Alignment:
| Q |
8 |
gttttgacataaatttaacatgttaaaattttgacagcaacaatttaaactaataatgattaactgtttaattgaagatcatataaatactttttcaagc |
107 |
Q |
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| T |
54271630 |
gttttgacataaatttaacatgttaaaattttgacagcaacaatttaaactaataatgattaaatatttaattgaagatcatataaagactttttcgagt |
54271531 |
T |
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| Q |
108 |
atgaagatcatgttaattagtatcataagatatttgtttagaaataaaataaaaaaccaattataact |
175 |
Q |
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| T |
54271530 |
atgaagatcatgttaattagtatcatgagatatttgttgagaaataaaataaaaaatcaattataact |
54271463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 54270592 - 54270548
Alignment:
| Q |
170 |
ataactttaaaaagttgactacacaagcttcaacagagttcttct |
214 |
Q |
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| T |
54270592 |
ataactttaaaaagttgactacacaagcttcaacacagttcttct |
54270548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 623
Target Start/End: Complemental strand, 54270278 - 54270249
Alignment:
| Q |
594 |
atacatatatctcaccccataatattccag |
623 |
Q |
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| T |
54270278 |
atacatatatctcaccccataatattccag |
54270249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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