View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1757-Insertion-28 (Length: 735)
Name: NF1757-Insertion-28
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757-Insertion-28 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
| [»] scaffold0073 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 670; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 8 - 735
Target Start/End: Original strand, 6986915 - 6987644
Alignment:
| Q |
8 |
ccaagcagatggcaacctgatcccgtggaagccgacccatcgaagggaagcagaaaccaaaggaaggttgacgtgctggggttgattgttggcataattg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
6986915 |
ccaagcagatggcaacctgatcccgtggaagccgacccatcgaagggaagcagaaaccaaaggaaggttgacgtgcttgggatgattgttggcataattg |
6987014 |
T |
|
| Q |
108 |
gttcaaaagatcacttagttcacgaatatcaaactatgcttgctgagaagcttttaaataaatctgattatgatattgactcagagatacgtactctaga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6987015 |
gttcaaaagatcacttagttcacgaatatcaaactatgcttgctgagaagcttttaaataaatctgattatgatattgactcagagatacgcactctaga |
6987114 |
T |
|
| Q |
208 |
actccttaaggtacttatacaaataaatctcatattgctgttttgtttgacggaaatatcatgttgataatcttatttaaacatctgttaaatgctttgt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6987115 |
actccttaaggtacttatacaaataaatctcatgttgctgttttgtttgacggaaatatcatgttgataatcttatttaaacatctgttaaatgctttgt |
6987214 |
T |
|
| Q |
308 |
tcatgcagatacatttcggagaaagcagcctacaaaaatgcgagattatgctcaatgatctaattggctcaaagagagtcaacactaacatcatagctac |
407 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
6987215 |
ttatgcagatacattttggagaaagcagcctacaaaaatgcgagattatgctcaatgatctaattggctcaaagagagtcaacactaacatcaaagctac |
6987314 |
T |
|
| Q |
408 |
cataagtcaaccaccccggacaagtaatttccaagttcaaatatcccttatttgtgatcattgccaatttgccaaatatatttttaacttttatttgcta |
507 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6987315 |
cataagtcaaccacctcggacaagtaatttccaagttcaaatatcccttatttgtgatcattgccaatttgccaaatatatttttaacttttatttgcta |
6987414 |
T |
|
| Q |
508 |
caattccttttcaccaaaatttggctatgcgctcttaggtgtggaggtcgaagacaatgcaatatccatggataaaatagcttccacaatcatatcttct |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6987415 |
caattccttttcaccaaaatttggctatgcgctcttaggcgtggaggtcgaagacaatgcaatatccatggataaaatagcttccacaatcatatcttct |
6987514 |
T |
|
| Q |
608 |
aatttctggcctccaattca-gtctgctgatatagtgattttattgatcattttttgaatttcagatgatgtg-aaaaattgatgtatttatgttatgtt |
705 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
6987515 |
aatttctggcctccaattcaggtctgcagatatagtgatttaattgatcattttttgaatttcagatgatgtgaaaaaattgatgtatttatgttatgtt |
6987614 |
T |
|
| Q |
706 |
ttaattgatagttctcactactcagcctga |
735 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6987615 |
ttaattgatagttctcactactcagcctga |
6987644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 7045585 - 7045770
Alignment:
| Q |
8 |
ccaagcagatggcaacctgatcccgtggaagccgacccatcgaagggaagcagaaaccaaaggaaggttgacgtgctggggttgattgttggcataattg |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
7045585 |
ccaagcagatggcaacctgatcctgtggaagccgatccatcgaagggaagcagacaccaaaggaaggttgacgtgcttgggatgattgttggcataattg |
7045684 |
T |
|
| Q |
108 |
gttcaaaagatcacttagttcacgaatatcaaactatgcttgctgagaagcttttaaataaatctgattatgatattgactcagag |
193 |
Q |
| |
|
|||| | |||||||||||||| ||| ||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
7045685 |
gttcgacagatcacttagttctcgattattaaactatgcttgttgagaagcttttaaataaatcttattatgatattgactcagag |
7045770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 650 - 729
Target Start/End: Original strand, 7009534 - 7009614
Alignment:
| Q |
650 |
ttgatcattttttgaatttcagatgatgtgaaaa-attgatgtatttatgttatgttttaattgatagttctcactactca |
729 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || | | |||||||||||||| |
|
|
| T |
7009534 |
ttgatcattttttgaatttcagatattgtgaaaaaattgatgtatttatgttatgtttcaaatttttgttctcactactca |
7009614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 650 - 729
Target Start/End: Original strand, 7024892 - 7024972
Alignment:
| Q |
650 |
ttgatcattttttgaatttcagatgatgtgaaaa-attgatgtatttatgttatgttttaattgatagttctcactactca |
729 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || | | |||||||||||||| |
|
|
| T |
7024892 |
ttgatcattttttgaatttcagatattgtgaaaaaattgatgtatttatgttatgtttcaaatttttgttctcactactca |
7024972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 650 - 729
Target Start/End: Original strand, 7055416 - 7055496
Alignment:
| Q |
650 |
ttgatcattttttgaatttcagatgatgtgaaaa-attgatgtatttatgttatgttttaattgatagttctcactactca |
729 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || | | |||||||||||||| |
|
|
| T |
7055416 |
ttgatcattttttgaatttcagatattgtgaaaaaattgatgtatttatgttatgtttcaaatttttgttctcactactca |
7055496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 285 - 732
Target Start/End: Complemental strand, 31962083 - 31961642
Alignment:
| Q |
285 |
taaacatctgttaaatgctttgttcatgcagatacatttcggagaaagcagcctacaaaaatgcgagattatgctcaatgatctaattggctcaaagaga |
384 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31962083 |
taaacatctgttcaatgctttgtttttgcagatacacttcggagagagcagcctacaaaaatgcgagattatgctcaatgatctaattggctcaaagaga |
31961984 |
T |
|
| Q |
385 |
gtcaacactaacatcatagctaccataagtcaaccaccccggacaagtaatttccaagttcaaatatcccttatttgtgatcattgccaatttgccaaat |
484 |
Q |
| |
|
||| |||||||||| | ||||||||||||||| | ||| | |||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
31961983 |
gtcgacactaacattaaagctaccataagtcagctacctcagacaagtaatttccaagttcaaatatcctctatttgtgatcattg--------ccaaag |
31961892 |
T |
|
| Q |
485 |
atatttttaacttttatttgctacaattccttttcaccaaaatttggctatgcgctcttaggtgtggaggtcgaagacaatgcaatatccatggataaaa |
584 |
Q |
| |
|
||| |||||||| | ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
31961891 |
atagttttaactatcatttgcttcaattccttttcaccaaaatttgtctatgcactcttaggtgtggaggttgaagacaatgcaatttccatggataaag |
31961792 |
T |
|
| Q |
585 |
tagcttccacaatcatatcttctaatttctggcctccaattca-gtctgctgatatagtgattttattgatcattttttgaatttcagatgatgtgaaaa |
683 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||| || || |||||| |||| | | ||||||||||| ||||||| | |||||||| ||||||||| |
|
|
| T |
31961791 |
tagccgccactatcatatcttctaatttctggcctccgatacaggtctgcagataaaattattttattgatgatttttt-attttcagataatgtgaaaa |
31961693 |
T |
|
| Q |
684 |
--attgatgtatttatgttatgttttaattgatagttctcactactcagcc |
732 |
Q |
| |
|
|||||| ||||||||||||| || || | |||||||||||||| ||||| |
|
|
| T |
31961692 |
agattgatatatttatgttatgattcaagttatagttctcactacccagcc |
31961642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 285 - 732
Target Start/End: Complemental strand, 31898289 - 31897848
Alignment:
| Q |
285 |
taaacatctgttaaatgctttgttcatgcagatacatttcggagaaagcagcctacaaaaatgcgagattatgctcaatgatctaattggctcaaagaga |
384 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31898289 |
taaacatatgtttaatgctttgtttctgcagatacacttcggagagagcagcctacaaaaatgcgagattatgctcaatgatctaattggctcaaagaga |
31898190 |
T |
|
| Q |
385 |
gtcaacactaacatcatagctaccataagtcaaccaccccggacaagtaatttccaagttcaaatatcccttatttgtgatcattgccaatttgccaaat |
484 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| ||||| | ||||||||||||||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
31898189 |
gtcaacactaacattaaagctaccataagtcagccacctcagacaagtaatttccaagttcaaataacctctatttgtgatcattg--------ccaaag |
31898098 |
T |
|
| Q |
485 |
atatttttaacttttatttgctacaattccttttcaccaaaatttggctatgcgctcttaggtgtggaggtcgaagacaatgcaatatccatggataaaa |
584 |
Q |
| |
|
|| |||||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
31898097 |
atggttttaactattatttgcttcaattccttttcaccaaaatttgtctatgcactcttaggtgtggaggttgaagacaatgcaatttccatggataaag |
31897998 |
T |
|
| Q |
585 |
tagcttccacaatcatatcttctaatttctggcctccaattca-gtctgctgatatagtgattttattgatcattttttgaatttcagatgatgtgaaaa |
683 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||| || || ||||| ||||| | | ||||||||||| ||||||| | |||||||| ||||||||| |
|
|
| T |
31897997 |
tagccgccactatcatatcttctaatttctggcctccgatacaggtctgttgataaaattattttattgataatttttt-attttcagataatgtgaaaa |
31897899 |
T |
|
| Q |
684 |
--attgatgtatttatgttatgttttaattgatagttctcactactcagcc |
732 |
Q |
| |
|
||| || ||||||||||||| || || | |||||||||||||| ||||| |
|
|
| T |
31897898 |
agattaatatatttatgttatgattcaagttatagttctcactacccagcc |
31897848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 31898606 - 31898380
Alignment:
| Q |
8 |
ccaagcagatggcaacctgatcccgtggaagccgacccatcgaagggaagcagaaaccaaaggaaggttgacgtgctggggttgattgttggcataattg |
107 |
Q |
| |
|
|||| |||||||||||||||||| || ||||| || |||| ||||||||||||||||||||| ||||||||| | || || ||||||| |||||||||| |
|
|
| T |
31898606 |
ccaaacagatggcaacctgatcctgtagaagcagatccattgaagggaagcagaaaccaaagaaaggttgacatacttggaatgattgtcggcataattg |
31898507 |
T |
|
| Q |
108 |
gttcaaaagatcacttagttcacgaatatcaaactatgcttgctgagaagcttttaaataaatctgattatgatattgactcagagatacgtactctaga |
207 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31898506 |
gttcaaaagatcaattagttcatgaatatcgaactatgcttgctgagaaacttctaaataaatctgattatgatattgactcagagatacgtactctaga |
31898407 |
T |
|
| Q |
208 |
actccttaaggtacttatacaaataaa |
234 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
31898406 |
actccttaaggtacttattcaaataaa |
31898380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 31962404 - 31962190
Alignment:
| Q |
8 |
ccaagcagatggcaacctgatcccgtggaagccgacccatcgaagggaagcagaaaccaaaggaaggttgacgtgctggggttgattgttggcataattg |
107 |
Q |
| |
|
|||| |||||||||||||||||| || ||||| || |||| ||||||||||||||||||||||||||||||| | || || |||||||||||||||||| |
|
|
| T |
31962404 |
ccaaacagatggcaacctgatcctgtagaagcagatccattgaagggaagcagaaaccaaaggaaggttgacatacttggaatgattgttggcataattg |
31962305 |
T |
|
| Q |
108 |
gttcaaaagatcacttagttcacgaatatcaaactatgcttgctgagaagcttttaaataaatctgattatgatattgactcagagatacgtactctaga |
207 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31962304 |
gttcaaaagatcaattagttcatgaatatcgaactatgcttgctgagaaacttctaaataaatctgattatgatattgactcagagatacgtactctaga |
31962205 |
T |
|
| Q |
208 |
actccttaaggtact |
222 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
31962204 |
actccttaaggtact |
31962190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 138; Significance: 9e-72; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 14418 - 14603
Alignment:
| Q |
8 |
ccaagcagatggcaacctgatcccgtggaagccgacccatcgaagggaagcagaaaccaaaggaaggttgacgtgctggggttgattgttggcataattg |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
14418 |
ccaagcagatggcaacctgatcctgtggaagccgatccatcgaagggaagcagacaccaaaggaaggttgacgtgcttgggatgattgttggcataattg |
14517 |
T |
|
| Q |
108 |
gttcaaaagatcacttagttcacgaatatcaaactatgcttgctgagaagcttttaaataaatctgattatgatattgactcagag |
193 |
Q |
| |
|
|||| | |||||||||||||| ||| ||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14518 |
gttcgacagatcacttagttctcgattattaaactatgcttgttgagaagcttttaaataaatcttattatgatattgactcagag |
14603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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