View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1757-Insertion-29 (Length: 376)
Name: NF1757-Insertion-29
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757-Insertion-29 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 43 - 376
Target Start/End: Original strand, 48752972 - 48753293
Alignment:
| Q |
43 |
catcttagtttgctttcctaattaatttcttataatgatggtggctttaagtttgagttccgaagtaagagtagtaatatgctacatgtcagataaaatc |
142 |
Q |
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| T |
48752972 |
catcttagtttgctttcctaattaatttcttataatgatggtggctttaagtttgagttccgaagtaagagtagtaatatgctacatgtcagataaaatc |
48753071 |
T |
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| Q |
143 |
acaattttgttataaaatcatacgtatataatgagttagaattctaagctctccttctttccttcttt--aacattcagtgttgtgtgtcattgtcagtt |
240 |
Q |
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| T |
48753072 |
acaattttggtataaaatcat-----------gagttagaattctaagctctcctt---tccttctttttaacattcagtgttgtgtgtcattgtcagtt |
48753157 |
T |
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| Q |
241 |
gccacttctttctgtttcggtcgtgtaacatgtttattctattatttgactggtttgtactttgtgtgacaatcactgatgcatacctcaaaacagagaa |
340 |
Q |
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| T |
48753158 |
gccacttctttctgtttcggtcgtgtaacatgtttattctattatttgactggtttgtactttgtgtgacaatcactgatgcatacctcaaaacagagaa |
48753257 |
T |
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| Q |
341 |
gcagtaaagcaagcaataaacacaaatcagtagaaa |
376 |
Q |
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| T |
48753258 |
gcagtaaagcaagcaataaacacaaatgagtagaaa |
48753293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 43 - 376
Target Start/End: Complemental strand, 52092759 - 52092427
Alignment:
| Q |
43 |
catcttagtttgctttcctaattaatttcttataatgatggtggctttaagtttgagttccgaagtaagagtagtaatatgctacatgtcagataaaatc |
142 |
Q |
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| T |
52092759 |
catcttagtttgctttcctaattaatttcttataatggtggtggctttaagtttgagttccgtagtaagagtggtaatatgctacatgtgagataaaatc |
52092660 |
T |
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| Q |
143 |
acaattttgttataaaatcatacgtatataatgagtt--agaattctaagctctccttctttccttctttaacattcagtgttgtgtgtcattgtcagtt |
240 |
Q |
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| T |
52092659 |
acaattttggtatagaatcatacgtaaatcatgagttagagaattctaagctc--------tccttctttaacattcagtgttgtgtgtcattgtcagtt |
52092568 |
T |
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| Q |
241 |
gcca--cttctttctgttt--------cggtcgtgtaacatgttt-attctattatttgactggtttgtactttgtgtgacaatcactgatgcatacctc |
329 |
Q |
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| T |
52092567 |
gccattatttattatgttttccaatacacttcttgtaacatgtttaattctattatttgactggtttgtactttgtgtgacaatcactgttgcatacctc |
52092468 |
T |
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| Q |
330 |
aaaacagagaagcagtaaagcaagcaataaacacaaatcagtagaaa |
376 |
Q |
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| T |
52092467 |
aaaacagagaagta------caagcaataaacacaaattagtagaaa |
52092427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 33575759 - 33575817
Alignment:
| Q |
317 |
tgatgcatacctcaaaacagagaagcagtaaagcaagcaataaacacaaatcagtagaaa |
376 |
Q |
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| T |
33575759 |
tgatgcagacctcaaaacagagaagtagtaaa-caagcaataaacacaaatgagtagaaa |
33575817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 38462695 - 38462727
Alignment:
| Q |
266 |
taacatgtttattctattatttgactggtttgt |
298 |
Q |
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| T |
38462695 |
taacatgtttattctattatttgactgttttgt |
38462727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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