View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1757-Insertion-31 (Length: 242)
Name: NF1757-Insertion-31
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757-Insertion-31 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 29631298 - 29631063
Alignment:
| Q |
7 |
acttcagcccttcacaagcctcgaaggcatacatgttatctcgataacggtcacacatcatctttttcagattactagtcatggtttctgaaaagaagag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29631298 |
acttcagcccttcacaagcctcgaaggcatacatgttatctcgataacggtcatacatcatctttttcagattactagtcatggtttctgaaaagaagag |
29631199 |
T |
|
| Q |
107 |
gttttgccggttttctggtaagcactggacgataacattcaattcatcccgaaaaccaacatccaaaagttggtctgcttcgtccaaaacaagaaactgc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29631198 |
gttttgccggttttctggtaagcactggacgataacattcaattcatcccgaaaaccaacatccaaaagttggtctgcttcgtccaaaacaagaaactgc |
29631099 |
T |
|
| Q |
207 |
agaaacaagcgtagccataataaagttaatgtttta |
242 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
29631098 |
agaaacaagtgtaaccataataaagttaatgtttta |
29631063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 36 - 215
Target Start/End: Complemental strand, 29632477 - 29632301
Alignment:
| Q |
36 |
tacatgttatctcgataacggtcacacatcatctttttcagattactagtcatggtttctgaaaagaagaggttttgccggttttctggtaagcactgga |
135 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29632477 |
tacatgttatcttaataacagtcacacatc---ttttgcagattactagtcatggttgctgaaaagaacaggttttgccggttttctggtaagcactgga |
29632381 |
T |
|
| Q |
136 |
cgataacattcaattcatcccgaaaaccaacatccaaaagttggtctgcttcgtccaaaacaagaaactgcagaaacaag |
215 |
Q |
| |
|
||| || ||||| || ||| |||||||||||||||| |||||||||||||| ||||| |||||||||||||||| |||| |
|
|
| T |
29632380 |
agatcactttcaactcctcctgaaaaccaacatccaagagttggtctgcttcatccaagacaagaaactgcagaagcaag |
29632301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 27662679 - 27662869
Alignment:
| Q |
14 |
cccttcacaagcctcgaaggcatacatgttatctcgataacggtcacacatcatctttttcagattactagtcatggtttctgaaaagaagaggttttgc |
113 |
Q |
| |
|
||||||| |||| || |||||||||| |||||| ||||||| |||| || | |||| || ||||||||| | ||| | |||||||| ||||||||| |
|
|
| T |
27662679 |
cccttcataagcttcaaaggcatacaacttatcttgataacgctcacgcaac---ttttgcaaattactagttgttgttgcagaaaagaataggttttgc |
27662775 |
T |
|
| Q |
114 |
cggttttctggtaagcactggacgataacattcaattcatcccgaaaaccaacatccaaaagttggtctgcttcgtccaaaacaagaaactgca |
207 |
Q |
| |
|
|||||||||||||||||||| | |||| |||||||||||| ||||||||||||||| | | | |||||||| ||||| ||||||||||||| |
|
|
| T |
27662776 |
cggttttctggtaagcactgaaatataaatttcaattcatcctgaaaaccaacatccaggactcgatctgcttcatccaagacaagaaactgca |
27662869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University