View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1757-Insertion-32 (Length: 177)
Name: NF1757-Insertion-32
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757-Insertion-32 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 99; Significance: 4e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 372746 - 372893
Alignment:
| Q |
8 |
ggttcataagaggaaacagaaatgaaaatgcaactaaacaccaaaaccaacaaaaaacttactcttcctcatttggtcttgcctcagaatttggaatata |
107 |
Q |
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| T |
372746 |
ggttcataagaggaaacagaaatgaaaatgcaactaaacaccaaaaccaacaaaaaacttactcttc----------------------tttggaatata |
372823 |
T |
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| Q |
108 |
tctataaggacaaataacaatgtattattctattggttcataagaggaaacagaaataaaaatgtaactg |
177 |
Q |
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| T |
372824 |
tctataaggacaaataacaatgtattattctattggttcataagaggaaacagaaataaaaatgtaactg |
372893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 372858 - 372945
Alignment:
| Q |
8 |
ggttcataagaggaaacagaaatgaaaatgcaactaaacaccaaaaccaacaaaaaacttactcttcctcatttggtcttgcctcagaat |
97 |
Q |
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| T |
372858 |
ggttcataagaggaaacagaaataaaaatgtaactgaacaccaaaaccaac--aaatcttactcttcctcatttggtcttgcctcagaat |
372945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 372744 - 372780
Alignment:
| Q |
140 |
ttggttcataagaggaaacagaaataaaaatgtaact |
176 |
Q |
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| T |
372744 |
ttggttcataagaggaaacagaaatgaaaatgcaact |
372780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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