View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1757-Insertion-4 (Length: 938)
Name: NF1757-Insertion-4
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757-Insertion-4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 735; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 735; E-Value: 0
Query Start/End: Original strand, 8 - 938
Target Start/End: Original strand, 27643588 - 27644522
Alignment:
| Q |
8 |
ctagcttcattagcacgttgtgtttactccttggtgacatacctattatgatagatgatcgatgtattgactatgtaaccgaaggggcatagggtgtaac |
107 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| |
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| T |
27643588 |
ctagcttcattagcacgttgtgtgcactccttggtgacatacctattatgatagatgatcgatgtatcgagtatgtaaccgaaggggcataggatgtaac |
27643687 |
T |
|
| Q |
108 |
tagattctcaagcacgtaatagaaatttgggtaagggagtcgtgacatattctcatgaaaaggtgtttcgtggcatataagtttggtggaccgaaccgga |
207 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||| ||| |
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| T |
27643688 |
tagatcctcaagcacgtaatagaaatttgggtaagggagtcgtggcatattctcatgaaaaggtggttcgtggcatataagtttggtggacagaactgga |
27643787 |
T |
|
| Q |
208 |
tcatgaaccggacccatgtaatgtttagttccagtttggagtgttatatgggtgagagaggaagatggagaagatttgaggacggtgagaacattaagaa |
307 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27643788 |
tcatgaaccggacccatgtaatgtttggttccggtttggagtgttatatggatgagagaggaagatggagaagatttgaggacagtgagaacattaagaa |
27643887 |
T |
|
| Q |
308 |
gcatggttttgttaacagtgatgttaacttcttcgtcacctacaaactggaatgtgacccagaagaggtgggtgatttcttgggctatgggtaataactt |
407 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| | ||| |
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| T |
27643888 |
gcatggttttgttaacggtgatgttagcttcttcgtcacctacaaactggaatgtgacccagaagaggtgggtgacttcttggactagtggtaacagctt |
27643987 |
T |
|
| Q |
408 |
ggtatgtgtgtcagctgagttgatggcgtcaaaggtgatgaaaccatcaaggatggaagaaggaaaccagctgtcggcggagcggcgagctgcaccgtat |
507 |
Q |
| |
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| T |
27643988 |
gtcatgtgtgtcagctgagttgacagcgtcaaaggtgatgaagccatcaaggatggaagagggaaaccagccgtcggcggagcggcgagctgcaccgtaa |
27644087 |
T |
|
| Q |
508 |
actttccatgggcctccaagacaatcaggctgcttcaaggctttggctaggcttagcccagccattcccgttactccaaccactagtgctacggaatttc |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27644088 |
actttccatgggcctccaagacaatcaggctgcttcaaggctttggctaggcttagcccagccattcccgttactccaaccactagtgctacggaatttc |
27644187 |
T |
|
| Q |
608 |
gtacattcatcacttcacagtgctataatggagaaaaaacttagtggcggtgtctgtttatataaaagcattagtgtatcgacgggtgattagtgatgtt |
707 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27644188 |
gtacattcatcacttcacagtgctataatggagaaaaaacttagtggcggtgtctgtttatataaaagcattagtgtattgacgggtgattagtgatgtt |
27644287 |
T |
|
| Q |
708 |
accttgcagataattatatcaaaaaataaacaaagtggatggatatactaattgaatctaggtgttttttcctatagaaaattatagattatcaatcggt |
807 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
27644288 |
accttgcaaataattatatcaaaaaataaacaaagtggatggatatgctaattgaatctgggtgttttttcctatagaaaattatagattattaatcggt |
27644387 |
T |
|
| Q |
808 |
ggttgataagataatgtttgcaaatttctgtgactcatagaacatgacccatatgtttgattacctagtgaagaca-nnnnnnnat-aaactcgtgtttt |
905 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||| |
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| T |
27644388 |
ggttgataagataatgtttgcaaatttctgtgactcatagaacatgacccatatgtttgtttacctagtgaagacattttttttataaaactcgtgtttt |
27644487 |
T |
|
| Q |
906 |
t--atcctttatcattgattggcaattgggtctgc |
938 |
Q |
| |
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| ||||||||||| |||||||||||||| ||||| |
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| T |
27644488 |
ttaatcctttatcactgattggcaattggatctgc |
27644522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 48 - 601
Target Start/End: Complemental strand, 50254400 - 50253847
Alignment:
| Q |
48 |
acctattatgatagatgatcgatgtattgactatgtaaccgaaggggcatagggtgtaactagattctcaagcacgtaatagaaatttgggtaagggagt |
147 |
Q |
| |
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||||||||||||||| || ||||||||||| ||||||| ||||| ||||||| | |||| |||| ||||||| |||||||||||||||| |||| |||| |
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| T |
50254400 |
acctattatgatagaggaacgatgtattgagtatgtaattgaaggtgcataggatttaacgagatcctcaagcgcgtaatagaaatttggataagagagt |
50254301 |
T |
|
| Q |
148 |
cgtgacatattctcatgaaaaggtgtttcgtggcatataagtttggtggaccgaaccggatcatgaaccggacccatgtaatgtttagttccagtttgga |
247 |
Q |
| |
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|| | ||||||||| | ||||||| ||||||||| ||||||||||| ||| ||||||| ||||| || ||||||| ||| ||||| ||||| ||||| | |
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| T |
50254300 |
cgaggcatattctcttcgaaaggtggttcgtggcagataagtttggtagactgaaccgggtcatgcactggacccaagtagtgtttggttcctgtttgta |
50254201 |
T |
|
| Q |
248 |
gtgttatatgggtgagagaggaagatggagaagatttgaggacggtgagaacattaagaagcatggttttgttaacagtgatgttaacttcttcgtcacc |
347 |
Q |
| |
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||||||||||||||||| ||||| ||| ||||||| ||||| |||||||| ||||||||||||| ||||||||| |||| |||||||||||||| | |
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|
| T |
50254200 |
ctgttatatgggtgagaggcgaagacggataagattttaggacagtgagaacgttaagaagcatggatttgttaacgctgatcttaacttcttcgtctgc |
50254101 |
T |
|
| Q |
348 |
tacaaactggaatgtgacccagaagaggtgggtgatttcttgggctatgggtaataacttggtatgtgtgtcagctgagttgatggcgtcaaaggtgatg |
447 |
Q |
| |
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||||| |||||||||||||||||| |||||||||| ||| | ||||| ||||||| ||||| |||||||||||||||| | ||||| ||||| ||| |
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| T |
50254100 |
tacaagctggaatgtgacccagaataggtgggtgacttcgttagctataggtaatagcttggcgcgtgtgtcagctgagttaactgcgtcgaaggttatg |
50254001 |
T |
|
| Q |
448 |
aaaccatcaaggatggaagaaggaaaccagctgtcggcggagcggcgagctgcaccgtatactttccatgggcctccaagacaatcaggctgcttcaagg |
547 |
Q |
| |
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|| | || |||||||||||||| ||||| |||| ||| |||||||||| || || ||||||||||| ||||| |||||||||||||||||||||| |
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| T |
50254000 |
aagctgtcgaggatggaagaagggaaccattcatcgggggaatggcgagctgcgccataaactttccatggacctccgagacaatcaggctgcttcaagg |
50253901 |
T |
|
| Q |
548 |
ctttggctaggcttagcccagccattcccgttactccaaccactagtgctacgg |
601 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
50253900 |
ctttggctaagcttaggccagccattcccgttactccaactactagtgctacgg |
50253847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 52 - 599
Target Start/End: Complemental strand, 50247259 - 50246712
Alignment:
| Q |
52 |
attatgatagatgatcgatgtattgactatgtaaccgaaggggcatagggtgtaactagattctcaagcacgtaatagaaatttgggtaagggagtcgtg |
151 |
Q |
| |
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||||||| ||| |||||||||||||| ||||||| |||||| | || | || ||| |||| |||||| ||| ||||||||||||||||||||||| | |
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| T |
50247259 |
attatgagagaggatcgatgtattgagtatgtaatcgaaggtgtgtatgatgcaacgagatcctcaagtgtgtagtagaaatttgggtaagggagtcgag |
50247160 |
T |
|
| Q |
152 |
acatattctcatgaaaaggtgtttcgtggcatataagtttggtggaccgaaccggatcatgaaccggacccatgtaatgtttagttccagtttggagtgt |
251 |
Q |
| |
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| T |
50247159 |
gcatattctcgttaaaaggtggttcgtggcatataagtttgttagaccggacggggtcatatatcggacccatgtaatgtttagttccggtttggaccgt |
50247060 |
T |
|
| Q |
252 |
tatatgggtgagagaggaagatggagaagatttgaggacggtgagaacattaagaagcatggttttgttaacagtgatgttaacttcttcgtcacctaca |
351 |
Q |
| |
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|||||||||||||| ||||||||||||||||| || ||||||| ||| ||| | ||||||| ||||||||||||||||||||||||||| || ||||| |
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|
| T |
50247059 |
tatatgggtgagaggagaagatggagaagatttaagaacggtgacaacgttatggagcatggatttgttaacagtgatgttaacttcttcatcttctaca |
50246960 |
T |
|
| Q |
352 |
aactggaatgtgacccagaagaggtgggtgatttcttgggctatgggtaataacttggtatgtgtgtcagctgagttgatggcgtcaaaggtgatgaaac |
451 |
Q |
| |
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|||||||| || |||||||||| |||||||| ||| | |||||| ||||||| |||| ||||||||||||||||| | |||||||| |||||||| | |
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|
| T |
50246959 |
aactggaaagtcacccagaagatgtgggtgacttcattggctataggtaatagtttggcgtgtgtgtcagctgagttaactgcgtcaaatgtgatgaagc |
50246860 |
T |
|
| Q |
452 |
catcaaggatggaagaaggaaaccagctgtcggcggagcggcgagctgcaccgtatactttccatgggcctccaagacaatcaggctgcttcaaggcttt |
551 |
Q |
| |
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| || |||||||||||||| ||||| ||| | ||| ||||||| | ||||| ||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
50246859 |
cgtctaggatggaagaagggaaccattcgtctggggaatggcgagcaccgccgtaaactttccatggacctccgagacaatcaggctgcttcaaggcttc |
50246760 |
T |
|
| Q |
552 |
ggctaggcttagcccagccattcccgttactccaaccactagtgctac |
599 |
Q |
| |
|
||||| |||||| ||| |||||||||| ||||| || ||||||||||| |
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|
| T |
50246759 |
ggctaagcttagtccaaccattcccgtaactccgacaactagtgctac |
50246712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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