View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1757-Insertion-5 (Length: 695)

Name: NF1757-Insertion-5
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1757-Insertion-5
NF1757-Insertion-5
[»] chr4 (5 HSPs)
chr4 (5-695)||(1840694-1841384)
chr4 (79-495)||(1820513-1820920)
chr4 (544-680)||(1823912-1824048)
chr4 (494-530)||(4701117-4701153)
chr4 (493-521)||(53801036-53801064)
[»] chr5 (2 HSPs)
chr5 (5-52)||(20478484-20478531)
chr5 (5-53)||(42509722-42509770)
[»] chr2 (2 HSPs)
chr2 (79-228)||(45105844-45105993)
chr2 (114-162)||(45132197-45132245)
[»] chr6 (1 HSPs)
chr6 (5-66)||(21467937-21467998)
[»] chr8 (1 HSPs)
chr8 (494-530)||(12514363-12514399)


Alignment Details
Target: chr4 (Bit Score: 647; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 5 - 695
Target Start/End: Original strand, 1840694 - 1841384
Alignment:
Q  5 acatttctttgtatattttggttgtctaataagatgtctcaaaaagtgactaatcaaataacgttactctaatatacctgagcaataatagtgatggaaa 104  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||    
T  1840694 acatttctttgcatattttgattgtctaataagatgtctcaaaaagtgactgattaaataacattactctaatatacctgagcaataatagtgatggaaa 1840793  T
Q  105 tagcagatttcccaaaaggcaagacactgctaccagtgacaaagagttgaagattttcaatatggttcaataatttgagttcaattccattttgtttctc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1840794 tagcagatttcccaaaaggcaagacactgctaccagtgacaaagagttgaagattttcaatatggttaaataatttgagttcaattccattttgtttctc 1840893  T
Q  205 acaatggatttcaataagcacttcctttccaatgacttttgcttcaatctctggaaggatattgttcttacaatcaccatcacaacttgtttcactcgaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1840894 acaatggatttcaataagcacttcctttccaatgacttttgcttcaatctctggaaggatattgttcttacaatcaccatcacaacttgtttcactcgaa 1840993  T
Q  305 ttcgtgtcttgattgtaattattgtttccaaatgaataaggtttccggagaaccatcaccggcgtgacaccaacatttttgtcttgtttctcgagctcat 404  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1840994 ttcgtgtcttcattgtaattattgtttccacatgaataaggtttccggagaaccatcaccggcgtgacaccaacatttttgtcttgtttctcgagctcat 1841093  T
Q  405 caacacgttctttaagttgtttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaatggaatattaaaattttagaaaaatat 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1841094 caacacgttctttaagttgtttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaatggaatattaaaattttagaaaaatat 1841193  T
Q  505 gatcaaaatatgttatacgaataatggacccgatgaaactagtgacaaatttaccttgctcaagccgggaatagtggctgaaagtgcaatgaatttctca 604  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1841194 gatcaaaatatattatacgaataatggatccgatgaaactagtgacaaatttaccttgctcaagccgggaatagtggctgaaagtgcaatgaatttctca 1841293  T
Q  605 gacaactcctgtcttcgttttctctctgccattatatgatcaatacactgtgaactgcttctacctctcttcactctattttgttgattta 695  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1841294 gacaactcctgtcttcgttttctctctgccattatatgatcaatacactgtgaactgcttctacctctcttcactccattttgttgattta 1841384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 79 - 495
Target Start/End: Original strand, 1820513 - 1820920
Alignment:
Q  79 tacctgagcaataatagtgatggaaatagcagatttcccaaaaggcaagacactgctaccagtgacaaagagttgaagattttcaatatggttcaataat 178  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||    
T  1820513 tacccgagcaataatagtgatggaaatagcagatttcccaaaaggcaagacactgctaccagtgacaaagagttgaagattttcaatgtggttaagtaat 1820612  T
Q  179 ttgagttcaattccattttgtttctcacaatggatttcaataagcacttcctttccaatgacttttgcttcaatctctggaaggatattgttcttacaat 278  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||  |  |||||||    
T  1820613 ttgagctcaattccattttgtttctcacaatggatttcaataagcacttcctttccaatgactcttgcttcaatatctggaaggatatgatggttacaat 1820712  T
Q  279 caccatcacaacttgtttcactcgaattcgtgtcttgattgtaattattgtttccaaatgaataaggtttccggagaaccatcaccggcgtgacaccaac 378  Q
    || || |||||||||||||||  ||||| |         |||| | |||| ||||| ||||||||||||  |||||||||||||||||||||||||||||    
T  1820713 catcaccacaacttgtttcaccagaatttg---------tgtattcattgattccacatgaataaggttgtcggagaaccatcaccggcgtgacaccaac 1820803  T
Q  379 atttttgtcttgtttctcgagctcatcaacacgttctttaagttgtttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaat 478  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||  |||||||| |     
T  1820804 atttttgtcttgtttctcgagctcttcaacatgttctttaagttgtttcacataatcaatcgcttctcgaagtaatgaagccttgtccatctataaagaa 1820903  T
Q  479 ggaatattaaaatttta 495  Q
    |||||  ||||||||||    
T  1820904 ggaatcgtaaaatttta 1820920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 544 - 680
Target Start/End: Original strand, 1823912 - 1824048
Alignment:
Q  544 tagtgacaaatttaccttgctcaagccgggaatagtggctgaaagtgcaatgaatttctcagacaactcctgtcttcgttttctctctgccattatatga 643  Q
    |||| ||||||||||||||||||| || |||||||| || ||||||||||||||||| |||||||| || ||||| | ||||||||||||||||||||||    
T  1823912 tagttacaaatttaccttgctcaatccaggaatagtagccgaaagtgcaatgaatttttcagacaattcttgtctcctttttctctctgccattatatga 1824011  T
Q  644 tcaatacactgtgaactgcttctacctctcttcactc 680  Q
    |||||||| |||||||||||||||||| |||||||||    
T  1824012 tcaatacattgtgaactgcttctacctttcttcactc 1824048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 494 - 530
Target Start/End: Original strand, 4701117 - 4701153
Alignment:
Q  494 tagaaaaatatgatcaaaatatgttatacgaataatg 530  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  4701117 tagaaaaatatgatcaaaacatgttatatgaataatg 4701153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 493 - 521
Target Start/End: Complemental strand, 53801064 - 53801036
Alignment:
Q  493 ttagaaaaatatgatcaaaatatgttata 521  Q
    |||||||||||||||||||||||||||||    
T  53801064 ttagaaaaatatgatcaaaatatgttata 53801036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 20478484 - 20478531
Alignment:
Q  5 acatttctttgtatattttggttgtctaataagatgtctcaaaaagtg 52  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  20478484 acatttctttgtatattttggttgtccaataagttgtttcaaaaagtg 20478531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 42509722 - 42509770
Alignment:
Q  5 acatttctttgtatattttggttgtctaataagatgtctcaaaaagtga 53  Q
    ||||||||||| ||||||||||||||||||||| | |||||| ||||||    
T  42509722 acatttctttgcatattttggttgtctaataagttctctcaacaagtga 42509770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 45105993 - 45105844
Alignment:
Q  79 tacctgagcaataatagtgatggaaatagcagatttcccaaaaggcaagacactgctaccagtgacaaagagttgaagattttcaatatggttcaataat 178  Q
    ||||||||||| |||||||| |  || ||  || ||||||||||| || ||||||||  |||||||||  || |||||||||||||     ||||||| |    
T  45105993 tacctgagcaacaatagtgaagccaagagttgaattcccaaaaggaaatacactgctggcagtgacaataagatgaagattttcaagcaaattcaatatt 45105894  T
Q  179 ttgagttcaattccattttgtttctcacaatggatttcaataagcacttc 228  Q
    ||||  ||||| |||||||  |||||||||||||| ||||| || |||||    
T  45105893 ttgatctcaatgccattttccttctcacaatggatctcaatgagtacttc 45105844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 45132245 - 45132197
Alignment:
Q  114 tcccaaaaggcaagacactgctaccagtgacaaagagttgaagattttc 162  Q
    ||||||||| ||| ||||||||| ||||||||||||| | |||||||||    
T  45132245 tcccaaaagccaatacactgctagcagtgacaaagagatcaagattttc 45132197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 21467998 - 21467937
Alignment:
Q  5 acatttctttgtatattttggttgtctaataagatgtctcaaaaagtgactaatcaaataac 66  Q
    |||||||||||||||||||||||||| |||||  | | | ||||||||| || |||||||||    
T  21467998 acatttctttgtatattttggttgtccaataaattattttaaaaagtgattattcaaataac 21467937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 494 - 530
Target Start/End: Complemental strand, 12514399 - 12514363
Alignment:
Q  494 tagaaaaatatgatcaaaatatgttatacgaataatg 530  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  12514399 tagaaaaatatgattaaaatatgttatatgaataatg 12514363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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