View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1757-Insertion-6 (Length: 711)
Name: NF1757-Insertion-6
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757-Insertion-6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 308 - 711
Target Start/End: Complemental strand, 11173324 - 11172907
Alignment:
| Q |
308 |
gaaaatttctatttagaagat-ggtagggtctgtgctgatgattttttgaactgtatttgcagccgacagaggtttggagatgcagaggcaaggaaatgg |
406 |
Q |
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| T |
11173324 |
gaaaatttctatttagaagattggtagggtctgtactgatgattttttgaactgtatttgcagccgacagaggtttggagatgcagaggcaaggaaatgg |
11173225 |
T |
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| Q |
407 |
tgggatgagaacagagatagacttcgagaacaataccttcagtgaaagcctttgtgctatgctgaagttaattggaatcttcatatttgaattgtatgtg |
506 |
Q |
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| T |
11173224 |
tgggatgagaacagagatagacttcgagaacaataccttcagtgaa-gcctttgtgctatgctgaagttaattggaatcttcatatttgaattgtatgtg |
11173126 |
T |
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| Q |
507 |
tcatatagaaaactttgtttctcatcattggtgaatatggactcataagttaataagttattcggttgagtcggatttttcagttaaatttgtttattgg |
606 |
Q |
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| T |
11173125 |
tcatatagaaaactttgtttctcatcattggtgaatatggattcatatgctaataagttattcggttgagtcggatttttcagttaaatttgtttattgg |
11173026 |
T |
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| Q |
607 |
agggtataatgttgttttccatattata-----------------tatttcacctgggattattatatattatggtcattgttgctataaatcaatttat |
689 |
Q |
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| T |
11173025 |
ggggtataa---tgttttccatattatatatatatgtacttgaattatttcacctgggattattatatattatggtcattgttgctaaatatcaatttat |
11172929 |
T |
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| Q |
690 |
catttgctaattttgtgtgtga |
711 |
Q |
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| T |
11172928 |
catttggtaattttgtgtgtga |
11172907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 277
Target Start/End: Complemental strand, 11173584 - 11173314
Alignment:
| Q |
7 |
actttaatccttcaggattcactatgggtgagggaagcagtagcaaccaaaacatgcatgcagcattaaggtcttcttcaatgaatgaaatttccttcag |
106 |
Q |
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| T |
11173584 |
actttaatccttcaggattcactatgggtgagggaagcagtagcaaccaaaacatgcatgcagcattaaggtcttcttctatgaatgaaatttccttcag |
11173485 |
T |
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| Q |
107 |
caactctagtgaccctgactcagaatggattgagcaagttgagcctggaatatttgtcacagtcaggcagtatcctgatgggaacaacgagcttagacgt |
206 |
Q |
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| T |
11173484 |
caattctagtgaccctgactcagaatggattgagcaagttgagcctggaatatttgtcacagtcaggcagtatcctgatgggaacaacgagcttagacgt |
11173385 |
T |
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| Q |
207 |
atcaaattcaggtaacatgcttatgtttaagctatttctatttaataaaagatagtatacgaaaatttcta |
277 |
Q |
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| T |
11173384 |
atcaaattcaggtaacatgcttatgtttaagctatttctatataataaaagatagtatacgaaaatttcta |
11173314 |
T |
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