View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1757-Insertion-9 (Length: 111)

Name: NF1757-Insertion-9
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1757-Insertion-9
NF1757-Insertion-9
[»] chr4 (11 HSPs)
chr4 (8-111)||(34662352-34662455)
chr4 (14-111)||(26832599-26832696)
chr4 (14-111)||(26433888-26433985)
chr4 (14-111)||(26435668-26435765)
chr4 (14-111)||(23868596-23868693)
chr4 (26-111)||(23453701-23453786)
chr4 (14-103)||(23885699-23885788)
chr4 (26-103)||(23401946-23402023)
chr4 (26-111)||(24307087-24307172)
chr4 (15-103)||(23416024-23416112)
chr4 (26-103)||(23408869-23408946)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 2e-52; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 2e-52
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 34662352 - 34662455
Alignment:
Q  8 tccagaggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34662352 tccagaggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgca 34662451  T
Q  108 ggtt 111  Q
    ||||    
T  34662452 ggtt 34662455  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 26832696 - 26832599
Alignment:
Q  14 ggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtt 111  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||    
T  26832696 ggctgaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtt 26832599  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 26433985 - 26433888
Alignment:
Q  14 ggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtt 111  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||    
T  26433985 ggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtt 26433888  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 26435765 - 26435668
Alignment:
Q  14 ggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtt 111  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||    
T  26435765 ggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtt 26435668  T

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Target: chr4; HSP #5
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 23868693 - 23868596
Alignment:
Q  14 ggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtt 111  Q
    ||||||||| | ||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||    
T  23868693 ggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgggtt 23868596  T

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Target: chr4; HSP #6
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 23453701 - 23453786
Alignment:
Q  26 ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtt 111  Q
    |||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||    
T  23453701 ttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtt 23453786  T

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Target: chr4; HSP #7
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 23885788 - 23885699
Alignment:
Q  14 ggctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctc 103  Q
    ||||||||| | ||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  23885788 ggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctc 23885699  T

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Target: chr4; HSP #8
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 23402023 - 23401946
Alignment:
Q  26 ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctc 103  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||    
T  23402023 ttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctc 23401946  T

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Target: chr4; HSP #9
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 24307172 - 24307087
Alignment:
Q  26 ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtt 111  Q
    ||||||||| ||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||    
T  24307172 ttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtt 24307087  T

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Target: chr4; HSP #10
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 23416024 - 23416112
Alignment:
Q  15 gctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctc 103  Q
    |||||||| | ||||||||| |||||||| || |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||    
T  23416024 gctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctc 23416112  T

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Target: chr4; HSP #11
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 23408869 - 23408946
Alignment:
Q  26 ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctc 103  Q
    ||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||    
T  23408869 ttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctc 23408946  T

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