View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17570_low_1 (Length: 655)
Name: NF17570_low_1
Description: NF17570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17570_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 18 - 649
Target Start/End: Original strand, 4093027 - 4093658
Alignment:
| Q |
18 |
ccttgttccttgaactcttcttactgtttctaatctttagcattgtatcaagaagtaagggtatgcatatgactctagacatgtccctcccttgtacttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4093027 |
ccttgttccttgaactcttcttactgtttctaatctttagcagtgtatcaagaagtacgggtatgcatatgactctagacatgtccctcccttgtacttt |
4093126 |
T |
|
| Q |
118 |
ggagtcatgagaacaagaacccttctctaatttcttgtttctttcttcaaaccttaatgagttggggaagtacatgcgttctctgtctcctgatctaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4093127 |
ggagtcatgagaacaagaacccttctctaatttcttgtttctttcttcaaaccttaatgagttggggaagtacattcgttctctgtctcctgatctaaat |
4093226 |
T |
|
| Q |
218 |
ccaatcaactgtgcaagggatacactgttgtctttgaagaaagatgctgtagactggttgtggccacaaaagaagaagtagaataaattgtaagcaggag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4093227 |
ccaatcaactgtgcaagggatacactgttgtctttgaagaaagatgctgtagactggttgtggccacaaaagaagaagtagaataaattgtaagcaggag |
4093326 |
T |
|
| Q |
318 |
acaagcttacaaccatataaataaaacataaagtgttcatagatttgcacataaaagtgaaaataacatattctttgaagtctcaaccatagacgggtat |
417 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4093327 |
acaagcttacaagcatataaataaaacataaagtgttcatagatttgcacataaaagtgaaaataacatattctttgaagtctcaaccatagactggtat |
4093426 |
T |
|
| Q |
418 |
ttgaaaatcgtttgaaactcaaacaacgacaaacattgccttctgaaagtagaaggactatcatctttctctattcatggatgagatgatgacttgattg |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4093427 |
ttgaaaatcgtttgaaactcaaacaacgacaaacactgccttctgaaagtagaaggacgatcatctttctctattcatggatgagatgatgacttgattg |
4093526 |
T |
|
| Q |
518 |
gtgttggttcgacaaaaacaatgggaaacgaattcatatttgtttttccttgtttttgttgaatcgacaattatcaggtcatcgtctccgtcgtaagaat |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4093527 |
gtgttggttcgacaaaaacaatgggaaacgaattcatatttgtttttccttgtttttgttgaatcgacaattatcaggtcatcgtctcagtcgtaagaat |
4093626 |
T |
|
| Q |
618 |
aaggaggaggattgtgaacatctccatctcag |
649 |
Q |
| |
|
||||||||||| |||||||||| |||||||| |
|
|
| T |
4093627 |
aaggaggaggaccgtgaacatctacatctcag |
4093658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 35006383 - 35006430
Alignment:
| Q |
231 |
caagggatacactgttgtctttgaagaaagatgctgtagactggttgt |
278 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||| |||||||||| |
|
|
| T |
35006383 |
caagggatacactgttatctttaaagaatgatgctgttgactggttgt |
35006430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 446
Target Start/End: Original strand, 40941071 - 40941103
Alignment:
| Q |
414 |
gtatttgaaaatcgtttgaaactcaaacaacga |
446 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
40941071 |
gtatttgaaaatcgtttgaaactccaacaacga |
40941103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 472
Target Start/End: Complemental strand, 12631003 - 12630935
Alignment:
| Q |
403 |
accatagacgggtatttgaaaatcgtttgaaactcaaacaacgacaaacattgccttctgaaagtagaag |
472 |
Q |
| |
|
||||||||| |||| |||||||| ||| |||||||| ||| |||| ||||||||||||| ||||||||| |
|
|
| T |
12631003 |
accatagactggtacttgaaaattgttctaaactcaa-caatgacagacattgccttctggaagtagaag |
12630935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University