View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17570_low_2 (Length: 517)
Name: NF17570_low_2
Description: NF17570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17570_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 4 - 500
Target Start/End: Complemental strand, 32001974 - 32001481
Alignment:
| Q |
4 |
agaagaagctaaggtaacaactaagacgtgttttttggtccaaatgaagccgacattgcattattatcaactcattgaactatcctaattaagtactccc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32001974 |
agaagaagctaaggtaacaactaagacgtgttttttggtccaaatgaagccgacattgcattattatcaactcattgaactatcctaattaagtactccc |
32001875 |
T |
|
| Q |
104 |
tatagccaaacagctactatagctagctagctagctctacctatgatcaatagcttcgttataggatactgttcatatcatcagattcattaaccaaacc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32001874 |
tatagccaaacagctactatagctagctagctagctctacctatgatcaatagcttcgttataggatactgttcatatcatcagattcattaaccaaacc |
32001775 |
T |
|
| Q |
204 |
aagtatgctattccaataatgcttattctcctcgagattcacgttatacatcatgcttccatccaaattttcc---tgattaccaccctcaagaacttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
32001774 |
aagtatgctattccaataatgcttattctcctcgagattcacgttacatatcatgcttccatccaaattttcctgatgatcaccaccctcaagaacttga |
32001675 |
T |
|
| Q |
301 |
agaacatttgttgaaataggaggggtgttaatattattatcaaatccaccgcttgctctaaatgcttccacagccgccataatatcatcatcttgctgaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32001674 |
agaacatttgttgaaataggaggggtgttaatattattatcaaatccaccgcttgctctaaatgcttccacagccgccataatatcatcatcttgctgaa |
32001575 |
T |
|
| Q |
401 |
agttcaacatagtgttattgttatcatgaccatgaccatgaccaacttctgtgttatgcttagttaaattgaattgtttccatatctcatcatcatcatc |
500 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32001574 |
agttcaacatagtgttattgttat------catgaccatgaccaccttctgtgttatgcttagttaaattgaattgtttccatatctcattatcatcatc |
32001481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 4 - 500
Target Start/End: Complemental strand, 31943015 - 31942522
Alignment:
| Q |
4 |
agaagaagctaaggtaacaactaagacgtgttttttggtccaaatgaagccgacattgcattattatcaactcattgaactatcctaattaagtactccc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31943015 |
agaagaagctaaggtaacaactaagacgtgttttttggtccaaatgaagccgacattgcattattatcaactcattgaactatcctaattaagtactccc |
31942916 |
T |
|
| Q |
104 |
tatagccaaacagctactatagctagctagctagctctacctatgatcaatagcttcgttataggatactgttcatatcatcagattcattaaccaaacc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31942915 |
tatagccaaacagctactatagctagctagctagctctacctatgatcaatagcttcgttataggatactgttcatatcatcagattcattaaccaaacc |
31942816 |
T |
|
| Q |
204 |
aagtatgctattccaataatgcttattctcctcgagattcacgttatacatcatgcttccatccaaattttcc---tgattaccaccctcaagaacttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
31942815 |
aagtatgctattccaataatgcttattctcctcgagattcacgttacaaatcatgcttccatccaaattttcctgatgatcaccaccctcaagaacttga |
31942716 |
T |
|
| Q |
301 |
agaacatttgttgaaataggaggggtgttaatattattatcaaatccaccgcttgctctaaatgcttccacagccgccataatatcatcatcttgctgaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31942715 |
agaacatttgttgaaataggaggggtgttaatattattatcaaaaccaccgcttgctctaaatgcttccacagccgccataatatcatcatcttgctgaa |
31942616 |
T |
|
| Q |
401 |
agttcaacatagtgttattgttatcatgaccatgaccatgaccaacttctgtgttatgcttagttaaattgaattgtttccatatctcatcatcatcatc |
500 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31942615 |
agttcaacatagtgttattgttat------catgaccatgaccaccttctgtgttatgcttagttaaattgaattgtttccatatctcataatcatcatc |
31942522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 127 - 336
Target Start/End: Complemental strand, 32004779 - 32004565
Alignment:
| Q |
127 |
tagctagctagctctacctatgatcaatagcttcgttataggatactgttcatatcatcagattcattaaccaaaccaagtatgctattccaataatgct |
226 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||| ||| |||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32004779 |
tagctagctagctctacctatgatctatagcttcattatagcataatgttcaaatcatgagattcattaaccaaaccaagt-tgctattccaataatgct |
32004681 |
T |
|
| Q |
227 |
tattctcctcgagattcacgttatacatcatgcttccatccaaattttcctgattaccaccctcaag------aacttgaagaacatttgttgaaatagg |
320 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
32004680 |
tattctcctcgagattcacgttacacatcatgcttccatccaaattttcctgatcactaccctcaagaaatttaacttcaagaatatttgttgaaatagg |
32004581 |
T |
|
| Q |
321 |
aggggtgttaatatta |
336 |
Q |
| |
|
||| || ||||||||| |
|
|
| T |
32004580 |
aggtgtattaatatta |
32004565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 32004999 - 32004889
Alignment:
| Q |
4 |
agaagaagctaaggtaacaactaagacgtgttttttg--gtccaaatgaagccgacattgcattattatcaactcattgaactatcctaattaagtactc |
101 |
Q |
| |
|
|||||| |||||||||||||| || | || |||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32004999 |
agaagaggctaaggtaacaaccaataagttatttttgttgtcaaaatgaagtcgacattgcattattatcaactcattgaactatcctaattaagtactc |
32004900 |
T |
|
| Q |
102 |
cctatagccaa |
112 |
Q |
| |
|
||||||||||| |
|
|
| T |
32004899 |
cctatagccaa |
32004889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 335 - 438
Target Start/End: Complemental strand, 32004361 - 32004254
Alignment:
| Q |
335 |
tattatcaaatccaccgcttgctctaaatgcttccaca------gccgccataatatcatcatcttgctgaaagttcaacatagtgttattgttatcatg |
428 |
Q |
| |
|
|||||||||||||||| | || |||||||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32004361 |
tattatcaaatccaccacatgatctaaatgcttccacatgtaatgccgccataatataattatcttgctgaaagttcaac--agtgttattgttatcatg |
32004264 |
T |
|
| Q |
429 |
accatgacca |
438 |
Q |
| |
|
| |||||||| |
|
|
| T |
32004263 |
atcatgacca |
32004254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University