View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17571_high_7 (Length: 256)
Name: NF17571_high_7
Description: NF17571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17571_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 51767316 - 51767072
Alignment:
| Q |
1 |
catttctagcttctgccaaacacaatttcacgttcaataactgtatccttattaccatagccctgtcagaaagctaactttatgatacataacttgtatg |
100 |
Q |
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| T |
51767316 |
catttctagcttctgccaaacacaatttcacgttcaataactgtatccttattaccatagccctgtcagaaagctaactttatgatacataacttgtatg |
51767217 |
T |
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| Q |
101 |
catggcctccctctaaaaacatggtccatttggaaaatacaatagtcaatgtagaatgatgtggatgcacatggaaatgattttgtgattcccttctcca |
200 |
Q |
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| T |
51767216 |
catggcctccctctaaaaacatggtccatttggaaaatacaatagtcaatgtagaatgatgtggatgcacatggaaatgattttgtgattcccttctcca |
51767117 |
T |
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| Q |
201 |
agaacatgggtgctccatctcttaagatacaatgtctgtggtcct |
245 |
Q |
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| T |
51767116 |
agaacatgggtgctccatctcttaagatacaatgtttgtggtcct |
51767072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 51755570 - 51755530
Alignment:
| Q |
1 |
catttctagcttctgccaaacacaatttcacgttcaataac |
41 |
Q |
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| T |
51755570 |
catttctagtttctgccaaacacaatttcacgttccataac |
51755530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 51755455 - 51755411
Alignment:
| Q |
98 |
atgcatggcctccctctaaaaacatggtccatttggaaaatacaa |
142 |
Q |
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| T |
51755455 |
atgcaaggcctccctttgaaaacaaggtccatttggaaaatacaa |
51755411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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