View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17571_high_8 (Length: 210)
Name: NF17571_high_8
Description: NF17571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17571_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 11326688 - 11326511
Alignment:
| Q |
19 |
gtgagtatctttttactccaaattactgtgcagaatttgacaatgttggagtaatcaggactcctgatgagacacatatgttctcgttcctgatatttag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11326688 |
gtgagtatctttttactccaaattactgtgcagaatttgacaatgttggagtaatcacgactcttgatgagacacatatgttctcgttcctgatatttag |
11326589 |
T |
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| Q |
119 |
tcttgtggatcatacaaggccccgaagttcattgtcggaagcaaaactacattcaaggctatttctccaacatataat |
196 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11326588 |
tcttgtggatcatacaaggccctgaagttcattttcggaagcaaaactacattcaaggctatttctccaacatataat |
11326511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 11484709 - 11484532
Alignment:
| Q |
19 |
gtgagtatctttttactccaaattactgtgcagaatttgacaatgttggagtaatcaggactcctgatgagacacatatgttctcgttcctgatatttag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11484709 |
gtgagtatctttttactccaaattactgtgcagaatttgacaatgttggagtaatcacgactcttgatgagacacatatgttctcgttcctgatatttag |
11484610 |
T |
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| Q |
119 |
tcttgtggatcatacaaggccccgaagttcattgtcggaagcaaaactacattcaaggctatttctccaacatataat |
196 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11484609 |
tcttgtggatcatacaaggccctgaagttcattttcggaagcaaaactacattcaaggctatttctccaacatataat |
11484532 |
T |
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