View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17571_low_2 (Length: 523)
Name: NF17571_low_2
Description: NF17571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17571_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 12 - 506
Target Start/End: Original strand, 7220148 - 7220643
Alignment:
| Q |
12 |
attattattgttatgttataataatagatttatgaagaagagaaaaaacctttgaaaccaaaagaaggatttgagtcagggattccaataagaagtggta |
111 |
Q |
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| T |
7220148 |
attattattgttatgttataataatagacttatgaagaagagaaaaaacctttgaaaccaaaagaaagatttgagttagggattccaataagaagtggta |
7220247 |
T |
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| Q |
112 |
gacacagagcaatacctaaaccagaatactactatgggtaagtactcatct----ttaaattgttgattactagattaagcaatcttctgaa---atgag |
204 |
Q |
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| T |
7220248 |
gacacagagcaatacctaaaccagaatactactatgggtaagtactcatctttaattaaattgttaattagtagattaagcaatcttctgaactgatgag |
7220347 |
T |
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| Q |
205 |
ttttgaattaattgattgaatcaacaaacagatcagcaagatcattggctggtaatgttactccaccatctcgtacttacatgagagttgctaagagtgg |
304 |
Q |
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| T |
7220348 |
ttttgaattaattgattgagtc----aacagatcagcaagatcattggctggtaatgttactccaccatctcgtacttacatgagagttgctaagagtgg |
7220443 |
T |
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| Q |
305 |
accttcagctatgagattaaacgacgacgattcatcttctgatgatgaggcgcattcagttcctgcaacacagcctagactaatccctcgttcagcggtg |
404 |
Q |
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| T |
7220444 |
accttcggcaatgggattga---acgaagattcatcttctgatgatgaggcgcattcggttcctgcaacacagcctagacaaatccctcgttctgcggtg |
7220540 |
T |
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| Q |
405 |
agtgagtcatccttaagtgtatgtctggaataacgatgagtttgatgaaatcatagtgacactccaaagtataggtttatagac-attgagttacacttc |
503 |
Q |
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| T |
7220541 |
agtgagtcatccttaagtgtctgtctggaataacaattagtttgatgaaatcacagtgacactccagagtataggtttatatacgattgagttacacttc |
7220640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 7238603 - 7238641
Alignment:
| Q |
284 |
catgagagttgctaagagtggaccttcagctatgagatt |
322 |
Q |
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| T |
7238603 |
catgagagttgctaagagtggaccttcagctatgagatt |
7238641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 7243779 - 7243817
Alignment:
| Q |
284 |
catgagagttgctaagagtggaccttcagctatgagatt |
322 |
Q |
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| T |
7243779 |
catgagagttgctaagagtggaccttcagctatgagatt |
7243817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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